Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001719`

染色体: Chr01 坐标: 31662954-31664288 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001719`
名称	SmilChr01G001719
描述	uncharacterized SmilChr01G001719
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	31662954 - 31664288 / `+`

ID 对照

NCBI Gene ID	`LOC131006301`
GeneID	`131006301`
locus_tag	`-`
NCBI Name	`LOC131006301`
原始查询	`SmilChr01G001719`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
产物	DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
Arabidopsis	`AT1G43760` (AT1G43760) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=28.9; qcov=0.671; evalue=6.13e-23; confidence=low
Rice	`Os06g0484800` - identity=27.6; qcov=0.734; evalue=2.54e-20; confidence=low
GO	GO:0003824 (catalytic activity)
KEGG	-
Pfam	PF03372 (Exo_endo_phos)
InterPro	-
eggNOG	-
NR	GeneID:131006301

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789480.1`
2	Nucleus	细胞核	0.80000	`XP_057789480.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789480.1`
4	Chromosome	染色体	0.00000	`XP_057789480.1`
5	Centromere	着丝粒	0.00000	`XP_057789480.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:31663005`	`C`	`T`	EMS_canonical_SNV	stop_gained	157	A1,A13,A18,A2,A20,A21,A22,A24,A25,A3,A4,A5,A7,A8,B1,B10,B100,B102,B103,B105,B106,B107,B108,B109,B111,B113,B115,B117,B119,B120,B126,B127,B128,B13,B130,B133,B135,B137,B138,B14,B15,B16,B18,B19,B2,B20,B21,B24,B25,B26,B27,B29,B30,B31,B33,B34,B36,B38,B39,B40,B41,B42,B44,B45,B46,B47,B50,B53,B54,B55,B56,B57,B58,B59,B6,B60,B64,B65,B66,B68,B69,B7,B73,B75,B76,B77,B80,B82,B83,B86,B9,B91,B94,B95,B96,B97,B99,C12,C13,C17,C18,C19,C20,C21,C22,C23,C24,C27,C28,C3,C30,C31,C32,C33,C34,C35,C38,C39,C40,C44,C46,C49,C5,C50,C51,C54,C55,C57,C59,C6,C60,C61,C63,C65,C67,C68,C71,C73,C75,C76,C77,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D10,D11,D4,D5,D7
`Chr1:31663014`	`C`	`T`	EMS_canonical_SNV	stop_gained	45	A11,A19,A2,B108,B110,B12,B123,B124,B125,B132,B135,B136,B23,B24,B26,B29,B30,B42,B43,B46,B48,B71,B72,B79,B8,B81,B82,B90,B92,B98,C19,C25,C33,C39,C46,C52,C53,C54,C56,C72,C74,C78,C83,D2,D6
`Chr1:31663015`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B27,B28,C83
`Chr1:31663044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B79,C54
`Chr1:31663079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B28,B68,C42,C54,D2
`Chr1:31663087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr1:31663105`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B100,B47,D7
`Chr1:31663105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B47,D7
`Chr1:31663112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:31663137`	`C`	`T`	EMS_canonical_SNV	stop_gained	18	A14,A23,A8,B101,B103,B13,B133,B138,B139,B22,B27,B28,B32,C20,C3,C51,C56,C83
`Chr1:31663139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr1:31663175`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B114,B31,B50,B95,C21,C7,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789480.1

444 aa

222

444

Exo_endo_phos

PF03372 Exo_endo_phos 4-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789480.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	4	206	3.4e-07	31.0	Endonuclease/Exonuclease/phosphatase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933497.1
ATGAAGTTGGCCTCATATAACATACGAGGGCTTGGGAGTAAGATTAAGAAGCGAGAAATTCGAGAGCTTATTCAGAAACAGATGATCGATCTTTGTTTGATACAAGAAACAAAAATGGAAAATTTCAGTGATTCCGATTTGAGAAGTATCTGGGGGTCCGAGAAATTTGATTTTGCAAGGAAACAGGCAGAGGGCAGATTGGGGGGCATCATCTCAATTTGGAATCCAATGATTTTCTCCAGTTTGAGTCAGTGGGACAT...

CDS

1 records

下载 CDS FASTA

LOC131006301
ATGAAGTTGGCCTCATATAACATACGAGGGCTTGGGAGTAAGATTAAGAAGCGAGAAATTCGAGAGCTTATTCAGAAACAGATGATCGATCTTTGTTTGATACAAGAAACAAAAATGGAAAATTTCAGTGATTCCGATTTGAGAAGTATCTGGGGGTCCGAGAAATTTGATTTTGCAAGGAAACAGGCAGAGGGCAGATTGGGGGGCATCATCTCAATTTGGAATCCAATGATTTTCTCCAGTTTGAGTCAGTGGGACAT...

Protein

1 records

下载 Protein FASTA

XP_057789480.1
MKLASYNIRGLGSKIKKREIRELIQKQMIDLCLIQETKMENFSDSDLRSIWGSEKFDFARKQAEGRLGGIISIWNPMIFSSLSQWDIPGALIVNGKWMSNNLLGCIINVYAFQILSDRELLWDSLGMVIRQNCDSCICIAGDFNTIRYDFERVGRGLQFSYRDILAFDNFIRANDLVEIRLQGRNFTWYQPNGQCKTKLNRFLVNEKWLEVWPHSKANGLQWSISDHCPILLETKWVDWGPKPFCFLNAWTSHKDFEKVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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