当前解析结果
SmilChr01G001720| 统一新 Gene ID | SmilChr01G001720 |
|---|---|
| 名称 | SmilChr01G001720 |
| 描述 | DDT domain-containing protein PTM-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 31669833 - 31678202 / - |
| NCBI Gene ID | LOC131020171 |
|---|---|
| GeneID | 131020171 |
| locus_tag | - |
| NCBI Name | LOC131020171 |
| 原始查询 | SmilChr01G001720 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DDT domain-containing protein PTM-like |
| 产物 | DDT domain-containing protein PTM-like |
| Arabidopsis | AT5G22760 (AT5G22760)PHD finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:832339] identity=41.1; qcov=0.63; evalue=0; confidence=medium |
| Rice | Os11g0148700- identity=39.9; qcov=0.299; evalue=1.13e-114; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF00628 (PHD); PF02791 (DDT); PF15612 (WHIM1); PF21743 (PTM_DIR17_Tudor); PF24294 (Chromo_PTM) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020171 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804846.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804846.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804846.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804846.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804846.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:31670303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:31670356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B51 |
Chr1:31670393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr1:31670712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C61,C82 |
Chr1:31671721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr1:31673370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr1:31673410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr1:31674901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B130,C51 |
Chr1:31675187 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B68,C42,D2 |
Chr1:31675465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr1:31675876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B28,B68,C42,C60,D2 |
Chr1:31676932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,B51,B70,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804846.1PF21743
PTM_DIR17_Tudor 42-88 aa
PF02791
DDT 205-261 aa
PF15612
WHIM1 308-351 aa
PF00628
PHD 426-467 aa
PF24294
Chromo_PTM 1081-1164 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804846.1 |
Pfam | PF21743 |
PTM_DIR17_Tudor | Domain | 42 | 88 | 1.1e-15 | 57.8 | PTM/DIR17-like, Tudor domain |
XP_057804846.1 |
Pfam | PF02791 |
DDT | Family | 205 | 261 | 8.8e-17 | 61.7 | DDT domain |
XP_057804846.1 |
Pfam | PF15612 |
WHIM1 | Motif | 308 | 351 | 1.2e-08 | 35.1 | WSTF, HB1, Itc1p, MBD9 motif 1 |
XP_057804846.1 |
Pfam | PF00628 |
PHD | Domain | 426 | 467 | 1.4e-10 | 41.7 | PHD-finger |
XP_057804846.1 |
Pfam | PF24294 |
Chromo_PTM | Domain | 1081 | 1164 | 2.5e-33 | 114.6 | Membrane-bound transcription factor PTM, chromo domain-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。