Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001760`

染色体: Chr01 坐标: 32311263-32317860 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001760`
名称	SmilChr01G001760
描述	ATP-dependent RNA helicase DEAH13-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	32311263 - 32317860 / `+`

ID 对照

NCBI Gene ID	`LOC131020191`
GeneID	`131020191`
locus_tag	`-`
NCBI Name	`LOC131020191`
原始查询	`SmilChr01G001760`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent RNA helicase DEAH13-like
产物	ATP-dependent RNA helicase DEAH13-like
Arabidopsis	`AT1G33390` (FAS4) RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840232] identity=53.9; qcov=0.993; evalue=0; confidence=high
Rice	`Os02g0736600` - identity=51.7; qcov=1; evalue=0; confidence=high
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure); GO:0005730 (nucleolus)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF21010 (HA2_C); PF23362 (DHX37_C)
InterPro	-
eggNOG	-
NR	GeneID:131020191

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804870.1`
2	Nucleolus	核仁	0.20000	`XP_057804870.1`
3	Chromosome	染色体	0.00000	`XP_057804870.1`
4	Centromere	着丝粒	0.00000	`XP_057804870.1`
5	Chromatin	染色质	0.00000	`XP_057804870.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:32311739`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:32312377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr1:32312412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B51,C33
`Chr1:32312447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,B99,C26
`Chr1:32312455`	`G`	`GTT`	2bp_insertion	frameshift_variant	244	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C58,C59,C6,C60,C61,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:32312457`	`AAG`	`A`	2bp_deletion	frameshift_variant	244	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C58,C59,C6,C60,C61,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:32312530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:32312838`	`GAA`	`G`	2bp_deletion	frameshift_variant	1	B88
`Chr1:32312838`	`GAA`	`G`	2bp_deletion	CDS_variant	1	B88
`Chr1:32312996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C73
`Chr1:32313165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr1:32313340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804870.1

1297 aa

648

1297

DEAD

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

DHX37_C

PF00270 DEAD 254-432 aa PF00271 Helicase_C 671-760 aa PF04408 WHD_HA2 822-849 aa PF21010 HA2_C 852-954 aa PF07717 OB_NTP_bind 1040-1127 aa PF23362 DHX37_C 1195-1274 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804870.1`	Pfam	`PF00270`	DEAD	Domain	254	432	7.8e-08	32.9	DEAD/DEAH box helicase
`XP_057804870.1`	Pfam	`PF00271`	Helicase_C	Domain	671	760	1.2e-11	45.6	Helicase conserved C-terminal domain
`XP_057804870.1`	Pfam	`PF04408`	WHD_HA2	Domain	822	849	1.4e-09	38.5	Helicase associated domain (HA2), winged-helix
`XP_057804870.1`	Pfam	`PF21010`	HA2_C	Domain	852	954	8.9e-09	36.5	Helicase associated domain (HA2), ratchet-like
`XP_057804870.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	1040	1127	3.1e-15	56.8	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057804870.1`	Pfam	`PF23362`	DHX37_C	Domain	1195	1274	5.5e-15	55.7	DEAH helicase DHX37 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948887.1
ATTCTTTGGTGCCCTTTTCTTTTTCCCTGTTACTTTTGGAGCTATTTGTTTCTCTTTCGCGCCGTCACCGCCGCCTCCCTCAAACAAAACCTCCGCCGTTCTGCTTCCCTCGCTTCTTCTTCTTCTTCTTCTCTTACATTTGTTTTCTGCTAACTAGGTTAGAATCCAAGAGACCTCCTATATTAGCTCAAATTCGTGGTTCACTGTCGAGGTATTAGAAAAAGAAACGGCCATTGCCGACTTGGCGAGATACTCATCCA...

CDS

1 records

下载 CDS FASTA

LOC131020191
ATGAAGCCGGAAAGAAATTCGAATGCCGGTGCGAATTCAACAAGTCTGGAGAGTGATGGCGGGGAATTCATCATATTGCCTCCGAAGAAGAAGAAAGATAATAAAGGGAAAAAACAGCTTAGTGTGAAGAAGCAGCCTAAGCTAAGCAAATCCCAGAAAAGAAAGTTAAAGAAGCTTGAGGAGGAGAAAGAAAGGGAAATCTTTCTATCAAAAAGCATTGAGACATTGGAGAAATACAAGATTAAAGACGATGTGTATTC...

Protein

1 records

下载 Protein FASTA

XP_057804870.1
MKPERNSNAGANSTSLESDGGEFIILPPKKKKDNKGKKQLSVKKQPKLSKSQKRKLKKLEEEKEREIFLSKSIETLEKYKIKDDVYSLMWSSRNLGQVETVREKRRREVEFSKAGLELPHAEKAHTKRKRDNASQDIDIEVYEDEICKPSTDVHSDTNMQSTHDEPDTSDRRVGGSFEEVANDDTQPSLLGSEEKSSCQIEEIIRPKNYNPEGENNHSNCTSLRNLVAPTVVHVSRPKDVEKLRMGLPIVMMEQEIMEAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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