当前解析结果
SmilChr01G001767| 统一新 Gene ID | SmilChr01G001767 |
|---|---|
| 名称 | SmilChr01G001767 |
| 描述 | fatty acyl-CoA reductase 3-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 32508018 - 32513077 / + |
| NCBI Gene ID | LOC131020404 |
|---|---|
| GeneID | 131020404 |
| locus_tag | - |
| NCBI Name | LOC131020404 |
| 原始查询 | SmilChr01G001767 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fatty acyl-CoA reductase 3-like |
| 产物 | fatty acyl-CoA reductase 3-like |
| Arabidopsis | AT4G33790 (CER4)Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:829521] identity=51.2; qcov=0.992; evalue=2.87e-179; confidence=high |
| Rice | Os08g0298700- identity=47.5; qcov=0.992; evalue=4.74e-158; confidence=high |
| GO | GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF03015 (Sterile); PF07993 (NAD_binding_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020404 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 0.80000 | XP_057805167.1 |
| 2 | Peroxisome membrane | 过氧化物酶体膜 | 0.40000 | XP_057805167.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057805167.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057805167.1 |
| 5 | Lipid droplet | 脂滴 | 0.20000 | XP_057805167.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:32508075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B117,B16,B18,B57 |
Chr1:32508301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,C42,D2 |
Chr1:32508317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B99,C26 |
Chr1:32508324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,C40,C6,C77 |
Chr1:32508331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:32508537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr1:32508545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B15,B38,B39,B8,C80 |
Chr1:32508577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:32508605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B121 |
Chr1:32508621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C45,C62 |
Chr1:32508623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B46,B63,C78 |
Chr1:32509510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B134,B6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805167.1PF01370
Epimerase 13-171 aa
PF01073
3Beta_HSD 14-165 aa
PF07993
NAD_binding_4 17-313 aa
PF03015
Sterile 413-487 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805167.1 |
Pfam | PF01370 |
Epimerase | Family | 13 | 171 | 2.6e-09 | 37.6 | NAD dependent epimerase/dehydratase family |
XP_057805167.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 14 | 165 | 2.8e-05 | 24.0 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057805167.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 17 | 313 | 5.8e-76 | 255.8 | Male sterility protein |
XP_057805167.1 |
Pfam | PF03015 |
Sterile | Family | 413 | 487 | 1.1e-15 | 58.3 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。