Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001771`

染色体: Chr01 坐标: 32627139-32630775 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001771`
名称	SmilChr01G001771
描述	multiple C2 domain and transmembrane region protein 6-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	32627139 - 32630775 / `+`

ID 对照

NCBI Gene ID	`LOC131020218`
GeneID	`131020218`
locus_tag	`-`
NCBI Name	`LOC131020218`
原始查询	`SmilChr01G001771`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	multiple C2 domain and transmembrane region protein 6-like
产物	multiple C2 domain and transmembrane region protein 6-like
Arabidopsis	`AT1G22610` (AT1G22610) C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838867] identity=68.5; qcov=1.03; evalue=0; confidence=high
Rice	`Os04g0691800` - identity=59.7; qcov=1.03; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00168 (C2); PF08372 (PRT_C)
InterPro	-
eggNOG	-
NR	GeneID:131020218

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057804901.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057804901.1`
3	Endosome	内体	0.40000	`XP_057804901.1`
4	Endosome membrane	内体膜	0.40000	`XP_057804901.1`
5	Vesicle	囊泡	0.20000	`XP_057804901.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:32627550`	`TGG`	`T`	2bp_deletion	frameshift_variant	84	A14,A16,A20,A21,A22,A23,A24,A25,A4,A6,A7,B106,B110,B113,B115,B119,B12,B121,B122,B124,B126,B128,B130,B137,B138,B15,B19,B20,B24,B27,B29,B30,B32,B34,B39,B44,B47,B51,B52,B54,B55,B56,B60,B61,B62,B65,B69,B75,B77,B85,B86,B87,B9,B94,B96,B99,C11,C15,C16,C20,C22,C23,C24,C31,C33,C37,C38,C4,C49,C5,C50,C52,C61,C69,C72,C8,C80,C82,C84,C85,C9,D10,D3,D5
`Chr1:32627575`	`C`	`CAT`	2bp_insertion	frameshift_variant	3	B103,B137,B26
`Chr1:32627575`	`C`	`CAT`	2bp_insertion	CDS_variant	3	B103,B137,B26
`Chr1:32627588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr1:32627605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr1:32627627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B119,B122,B81
`Chr1:32627629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,D10
`Chr1:32627636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,C2,C71
`Chr1:32627642`	`C`	`T`	EMS_canonical_SNV	stop_gained	258	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C56,C57,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:32627659`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	10	B16,B49,B56,B69,B96,C30,C41,C60,C70,C73
`Chr1:32627668`	`CAA`	`C`	2bp_deletion	frameshift_variant	10	B16,B49,B56,B69,B96,C30,C41,C60,C70,C73
`Chr1:32627679`	`G`	`A`	EMS_canonical_SNV	stop_gained	244	A1,A10,A11,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B107,B108,B11,B111,B112,B113,B114,B115,B117,B118,B12,B120,B122,B123,B124,B125,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B67,B68,B69,B7,B71,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C56,C57,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804901.1

1012 aa

506

1012

PRT_C

PF00168 C2 3-90 aa PF00168 C2 279-382 aa PF00168 C2 441-533 aa PF00168 C2 605-712 aa PF08372 PRT_C 857-1012 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804901.1`	Pfam	`PF00168`	C2	Domain	3	90	2.3e-90	298.4	C2 domain
`XP_057804901.1`	Pfam	`PF00168`	C2	Domain	279	382	2.3e-90	298.4	C2 domain
`XP_057804901.1`	Pfam	`PF00168`	C2	Domain	441	533	2.3e-90	298.4	C2 domain
`XP_057804901.1`	Pfam	`PF00168`	C2	Domain	605	712	2.3e-90	298.4	C2 domain
`XP_057804901.1`	Pfam	`PF08372`	PRT_C	Family	857	1012	9e-76	253.7	Plant phosphoribosyltransferase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948918.1
TTACACGTATAGTCGCAAGATTTCGAGATAAATACATGTAAGAAACACTATGACCTAATCCACAATCTTATTAGAGCTACAAATCAAAGAAAAAGAAAAAAGAAAAAAAAAACACAAAACAAGAAGCAGAAGAGATAAACATGGTGTAAGAGTAGGGGCCCCCACCCCCAAACCCAAAAATATTAAATTTCTTTATTACCATAACTATTACCTCTTTCCTCCCAACAAAATTCAAACTCATGTTCCTGTCTTGTTACTCC...

CDS

1 records

下载 CDS FASTA

LOC131020218
ATGGCGAAGCTGGTGGTGGAAGTTCTCGACGCCAGCAACCTCATGCCCAAAGACGGCCATGGCAGCGCCTCCCCTTTTGTCGAAGTCGAATTCGAGGAGCAGCACCACCGAACTTCAACTAAGCACAAAGATCTCAACCCTTATTGGGATGAGAAGCTCGTCTTCAACATCAAGAACCCCAAAGATCTCCCCAACAAAGCAATCGACGTCCAAGTCTACAATGATAGTAAGCAAGGCCACAAGAATTTTCTCGGAAAAGT...

Protein

1 records

下载 Protein FASTA

XP_057804901.1
MAKLVVEVLDASNLMPKDGHGSASPFVEVEFEEQHHRTSTKHKDLNPYWDEKLVFNIKNPKDLPNKAIDVQVYNDSKQGHKNFLGKVRISGMFVPHSEQESMGQRYPLEKRGPFSHVKGDIALKIYTAHGGGGDRFEEVLNHDAGNVEDHHHHHHPKHKESAPPPLKEINTDEFFYKESHDRSKKKNREKEVRTFYSIPGGGGGPPPPPAERPPVFEKRGDFAKAGGAPAATVMQMQFPGQKPEYGVVETRPPLAARMGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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