当前解析结果
SmilChr01G001773| 统一新 Gene ID | SmilChr01G001773 |
|---|---|
| 名称 | SmilChr01G001773 |
| 描述 | putative wall-associated receptor kinase-like 16 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 32647158 - 32649996 / + |
| NCBI Gene ID | LOC131020254 |
|---|---|
| GeneID | 131020254 |
| locus_tag | - |
| NCBI Name | LOC131020254 |
| 原始查询 | SmilChr01G001773 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative wall-associated receptor kinase-like 16 |
| 产物 | putative wall-associated receptor kinase-like 16 |
| Arabidopsis | AT1G21270 (WAK2)wall-associated kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838723] identity=42.4; qcov=1; evalue=0; confidence=medium |
| Rice | Os02g0111600 (OsWAK11)- identity=43.5; qcov=0.942; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020254 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804945.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804945.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804945.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804945.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804945.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:32647385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr1:32647400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B44,B6,C6 |
Chr1:32647485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:32647503 |
G |
GC |
1bp_insertion | frameshift_variant | 87 | A11,A16,A18,A2,A3,A4,A6,A8,B102,B110,B12,B123,B128,B129,B13,B130,B134,B138,B15,B21,B22,B24,B25,B3,B33,B34,B36,B49,B51,B52,B59,B60,B63,B64,B68,B73,B74,B77,B79,B81,B86,B87,B89,B9,B95,B98,C1,C12,C13,C14,C15,C18,C21,C24,C25,C26,C33,C34,C35,C4,C42,C44,C45,C48,C49,C55,C6,C61,C62,C63,C66,C67,C71,C73,C75,C77,C79,C81,C85,C86,C87,C9,D1,D11,D3,D5,D9 |
Chr1:32647593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:32647613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,D7 |
Chr1:32647627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C71 |
Chr1:32647683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr1:32647736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B129,B29,B52,D6 |
Chr1:32647795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr1:32647812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B100,B129,B52 |
Chr1:32647813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B100,B129,B52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804945.1PF13947
GUB_WAK_bind 27-83 aa
PF07645
EGF_CA 284-323 aa
PF00069
Pkinase 413-677 aa
PF07714
PK_Tyr_Ser-Thr 418-681 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804945.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 27 | 83 | 1.3e-10 | 42.2 | Wall-associated receptor kinase galacturonan-binding |
XP_057804945.1 |
Pfam | PF07645 |
EGF_CA | Domain | 284 | 323 | 4.2e-09 | 37.2 | Calcium-binding EGF domain |
XP_057804945.1 |
Pfam | PF00069 |
Pkinase | Domain | 413 | 677 | 3e-44 | 152.1 | Protein kinase domain |
XP_057804945.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 418 | 681 | 9e-45 | 153.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。