Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001792`

染色体: Chr01 坐标: 32778863-32782118 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001792`
名称	SmilChr01G001792
描述	receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	32778863 - 32782118 / `-`

ID 对照

NCBI Gene ID	`LOC131020464`
GeneID	`131020464`
locus_tag	`-`
NCBI Name	`LOC131020464`
原始查询	`SmilChr01G001792`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
产物	receptor homology region%2C transmembrane domain- and RING domain-containing protein 2-like
Arabidopsis	`AT1G71980` (AT1G71980) Protease-associated (PA) RING/U-box zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:843529] identity=62.6; qcov=0.879; evalue=7.62e-125; confidence=high
Rice	`Os03g0167500` (OsRMR3) - identity=63.5; qcov=0.819; evalue=1.79e-135; confidence=high
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF02225 (PA); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131020464

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	1.00000	`XP_057805266.1`
2	Vacuole	液泡	1.00000	`XP_057805282.1`
3	Endosome	内体	0.60000	`XP_057805311.1`
4	Golgi apparatus	高尔基体	0.40000	`XP_057805266.1`
5	Trans-golgi network	Trans-golgi network	0.40000	`XP_057805282.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:32779254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B100,B40,C12,C26
`Chr1:32779268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B104,B18
`Chr1:32779303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B124,C20,C70
`Chr1:32779419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:32779456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B55,D6
`Chr1:32779465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,C45
`Chr1:32779574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,B98,C48
`Chr1:32779596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:32779611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr1:32779744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:32779747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,C15
`Chr1:32779822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805266.1

418 aa

209

418

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF02225 PA 75-157 aa PF13639 zf-RING_2 248-291 aa PF17123 zf-RING_11 249-276 aa PF00097 zf-C3HC4 249-290 aa PF13923 zf-C3HC4_2 249-290 aa

XP_057805275.1

415 aa

208

415

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF02225 PA 72-154 aa PF13639 zf-RING_2 245-288 aa PF17123 zf-RING_11 246-273 aa PF00097 zf-C3HC4 246-287 aa PF13923 zf-C3HC4_2 246-287 aa

XP_057805282.1

403 aa

202

403

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF02225 PA 75-142 aa PF13639 zf-RING_2 233-276 aa PF17123 zf-RING_11 234-261 aa PF00097 zf-C3HC4 234-275 aa PF13923 zf-C3HC4_2 234-275 aa

XP_057805290.1

400 aa

200

400

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF02225 PA 72-139 aa PF13639 zf-RING_2 230-273 aa PF17123 zf-RING_11 231-258 aa PF00097 zf-C3HC4 231-272 aa PF13923 zf-C3HC4_2 231-272 aa

XP_057805301.1

380 aa

190

380

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF02225 PA 75-157 aa PF13639 zf-RING_2 248-291 aa PF17123 zf-RING_11 249-276 aa PF00097 zf-C3HC4 249-290 aa PF13923 zf-C3HC4_2 249-290 aa

XP_057805311.1

365 aa

182

365

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF02225 PA 75-142 aa PF13639 zf-RING_2 233-276 aa PF17123 zf-RING_11 234-261 aa PF00097 zf-C3HC4 234-275 aa PF13923 zf-C3HC4_2 234-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805266.1`	Pfam	`PF02225`	PA	Domain	75	157	3.7e-12	46.9	PA domain
`XP_057805266.1`	Pfam	`PF13639`	zf-RING_2	Domain	248	291	2.1e-13	51.0	Ring finger domain
`XP_057805266.1`	Pfam	`PF17123`	zf-RING_11	Domain	249	276	8.3e-11	42.1	RING-like zinc finger
`XP_057805266.1`	Pfam	`PF00097`	zf-C3HC4	Domain	249	290	6.7e-08	33.0	Zinc finger, C3HC4 type (RING finger)
`XP_057805266.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	249	290	1.2e-06	29.0	Zinc finger, C3HC4 type (RING finger)
`XP_057805275.1`	Pfam	`PF02225`	PA	Domain	72	154	3.3e-12	47.1	PA domain
`XP_057805275.1`	Pfam	`PF13639`	zf-RING_2	Domain	245	288	2e-13	51.0	Ring finger domain
`XP_057805275.1`	Pfam	`PF17123`	zf-RING_11	Domain	246	273	8.2e-11	42.1	RING-like zinc finger
`XP_057805275.1`	Pfam	`PF00097`	zf-C3HC4	Domain	246	287	6.7e-08	33.0	Zinc finger, C3HC4 type (RING finger)
`XP_057805275.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	246	287	1.2e-06	29.0	Zinc finger, C3HC4 type (RING finger)
`XP_057805282.1`	Pfam	`PF02225`	PA	Domain	75	142	1.1e-12	48.6	PA domain
`XP_057805282.1`	Pfam	`PF13639`	zf-RING_2	Domain	233	276	2e-13	51.1	Ring finger domain
`XP_057805282.1`	Pfam	`PF17123`	zf-RING_11	Domain	234	261	7.8e-11	42.2	RING-like zinc finger
`XP_057805282.1`	Pfam	`PF00097`	zf-C3HC4	Domain	234	275	6.4e-08	33.1	Zinc finger, C3HC4 type (RING finger)
`XP_057805282.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	234	275	1.1e-06	29.1	Zinc finger, C3HC4 type (RING finger)
`XP_057805290.1`	Pfam	`PF02225`	PA	Domain	72	139	1e-12	48.7	PA domain
`XP_057805290.1`	Pfam	`PF13639`	zf-RING_2	Domain	230	273	1.9e-13	51.1	Ring finger domain
`XP_057805290.1`	Pfam	`PF17123`	zf-RING_11	Domain	231	258	7.7e-11	42.2	RING-like zinc finger
`XP_057805290.1`	Pfam	`PF00097`	zf-C3HC4	Domain	231	272	6.3e-08	33.1	Zinc finger, C3HC4 type (RING finger)
`XP_057805290.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	231	272	1.1e-06	29.1	Zinc finger, C3HC4 type (RING finger)
`XP_057805301.1`	Pfam	`PF02225`	PA	Domain	75	157	3.4e-12	47.0	PA domain
`XP_057805301.1`	Pfam	`PF13639`	zf-RING_2	Domain	248	291	1.6e-13	51.4	Ring finger domain
`XP_057805301.1`	Pfam	`PF17123`	zf-RING_11	Domain	249	276	7e-11	42.3	RING-like zinc finger
`XP_057805301.1`	Pfam	`PF00097`	zf-C3HC4	Domain	249	290	5.3e-08	33.3	Zinc finger, C3HC4 type (RING finger)
`XP_057805301.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	249	290	9e-07	29.3	Zinc finger, C3HC4 type (RING finger)
`XP_057805311.1`	Pfam	`PF02225`	PA	Domain	75	142	9.8e-13	48.8	PA domain
`XP_057805311.1`	Pfam	`PF13639`	zf-RING_2	Domain	233	276	1.5e-13	51.5	Ring finger domain
`XP_057805311.1`	Pfam	`PF17123`	zf-RING_11	Domain	234	261	6.6e-11	42.4	RING-like zinc finger
`XP_057805311.1`	Pfam	`PF00097`	zf-C3HC4	Domain	234	275	5e-08	33.4	Zinc finger, C3HC4 type (RING finger)
`XP_057805311.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	234	275	8.3e-07	29.4	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057949299.1
AAATTAGTTATGGATCAGATAAAAGAATTTAACTCAAATCACAGGTGTTAGTTGCAAATCTCGAGATTATATATATTTGCAGACGGAGATATTCATGCATGGACCCCTAAAAGGATAATACTTTAATTTCTTTAAATAGTGAATCGTAATCTAGATTGATAATTCCCCTGAAATAACTCGTTGATCCAATATGAGCATACGACTGATCCAAAATTAACGAAATTCTTTTGCAAAAGCCCTAAAAAAGTTTTGCTGCAGTA...

XM_057949292.1
AGTTATGGATCAGATAAAAGAATTTAACTCAAATCACAGGTGTTAGTTGCAAATCTCGAGATTATATATATTTGCAGACGGAGATATTCATGCATGGACCCCTAAAAGGATAATACTTTAATTTCTTTAAATAGTGAATCGTAATCTAGATTGATAATTCCCCTGAAATAACTCGTTGATCCAATATGAGCATACGACTGATCCAAAATTAACGAAATTCTTTTGCAAAAGCCCTAAAAAAGTTTTGCTGCAGTATGGAA...

CDS

6 records

下载 CDS FASTA

LOC131020464
ATGTTGTATTTGTGGGTATCTTTGTGCTGCATTTCCTATTTCATGGGTTTTTTCGCCGCTGCTGGAAATGTGGTTATGATTGCAAAGAATGTGACTTTGTCTTTCGACGACATTGAAGCTAACTTTGTGAGAGAGTCTGGCATATGTGGGACGGTGAGCATTGCAGAACCTTTGGATGCTTGCTCGTTGCTGACCAATGAAAGAGTTGCAAGTAAGAACGGCACCAGATATCCGTTCGTGTTGATAGTCAGAGGAGGATG...

Protein

6 records

下载 Protein FASTA

XP_057805266.1
MLYLWVSLCCISYFMGFFAAAGNVVMIAKNVTLSFDDIEANFAPSVRESGICGTVSIAEPLDACSLLTNERVASKNGTRYPFVLIVRGGCSFEDKVRRAQAAGFEAAIVYDNETSDLVASSKPIVFGHLPRVNKVAGNPVGININAVFVSKVSGETLAKYAGASDLQLWIVPSYENPSWSIIALSFISLLGVSAVLATCFFVRRHRFRSERPLAPRVREFHGISSRLVKAMPSLIFTAVLEDNCTSQTCAICLEDYSVGE...

XP_057805275.1
MLYLWVSLCCISYFMGFFAAAGNVVMIAKNVTLSFDDIEANFVRESGICGTVSIAEPLDACSLLTNERVASKNGTRYPFVLIVRGGCSFEDKVRRAQAAGFEAAIVYDNETSDLVASSKPIVFGHLPRVNKVAGNPVGININAVFVSKVSGETLAKYAGASDLQLWIVPSYENPSWSIIALSFISLLGVSAVLATCFFVRRHRFRSERPLAPRVREFHGISSRLVKAMPSLIFTAVLEDNCTSQTCAICLEDYSVGEKLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器