Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001801`

染色体: Chr01 坐标: 32922599-32927332 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001801`
名称	SmilChr01G001801
描述	probable glucomannan 4-beta-mannosyltransferase 11
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	32922599 - 32927332 / `+`

ID 对照

NCBI Gene ID	`LOC131020337`
GeneID	`131020337`
locus_tag	`-`
NCBI Name	`LOC131020337`
原始查询	`SmilChr01G001801`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable glucomannan 4-beta-mannosyltransferase 11
产物	probable glucomannan 4-beta-mannosyltransferase 11
Arabidopsis	`AT5G22740` (CSLA02) cellulose synthase-like A02 [Source:NCBI gene (formerly Entrezgene);Acc:832337] identity=61.1; qcov=0.949; evalue=0; confidence=high
Rice	`Os06g0625700` (OsCslA9) - identity=57.3; qcov=0.963; evalue=1.79e-180; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0051753 (mannan synthase activity)
KEGG	-
Pfam	PF00535 (Glycos_transf_2); PF13506 (Glyco_transf_21); PF13632 (Glyco_trans_2_3); PF13641 (Glyco_tranf_2_3)
InterPro	-
eggNOG	-
NR	GeneID:131020337

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.60000	`XP_057805072.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057805082.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057805082.1`
4	Cell membrane	细胞膜	0.20000	`XP_057805072.1`
5	Nucleus	细胞核	0.00000	`XP_057805082.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:32922954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B47,D7
`Chr1:32923137`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B139
`Chr1:32923137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:32925728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr1:32926114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C1,C17,C31,C4,C49
`Chr1:32926183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C1,C17,C31,C4,C49
`Chr1:32926220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C1,C17
`Chr1:32926873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B133,B27,C51
`Chr1:32926884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,D7
`Chr1:32926928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:32926979`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B99
`Chr1:32926979`	`CT`	`C`	1bp_deletion	CDS_variant	1	B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805072.1

543 aa

272

543

Glyco_tranf_2_3

Glycos_transf_2

Glyco_trans_2_3

PF13641 Glyco_tranf_2_3 98-333 aa PF00535 Glycos_transf_2 103-259 aa PF13632 Glyco_trans_2_3 191-406 aa

XP_057805082.1

433 aa

216

433

Glyco_tranf_2_3

Glycos_transf_2

Glyco_transf_21

Glyco_trans_2_3

PF13641 Glyco_tranf_2_3 98-333 aa PF00535 Glycos_transf_2 103-259 aa PF13506 Glyco_transf_21 190-354 aa PF13632 Glyco_trans_2_3 191-406 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805072.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	98	333	2.7e-13	50.9	Glycosyltransferase like family 2
`XP_057805072.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	103	259	1.5e-07	32.2	Glycosyl transferase family 2
`XP_057805072.1`	Pfam	`PF13632`	Glyco_trans_2_3	Domain	191	406	2.1e-21	77.4	Glycosyl transferase family group 2
`XP_057805082.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	98	333	1.6e-13	51.7	Glycosyltransferase like family 2
`XP_057805082.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	103	259	9.5e-08	32.9	Glycosyl transferase family 2
`XP_057805082.1`	Pfam	`PF13506`	Glyco_transf_21	Domain	190	354	3.5e-05	23.5	Glycosyl transferase family 21
`XP_057805082.1`	Pfam	`PF13632`	Glyco_trans_2_3	Domain	191	406	1.1e-21	78.3	Glycosyl transferase family group 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949089.1
GAGGAATGTTAGATATTCCCATTTGGCAGCACCATACTATTTTTCATGAGACAATAATGCGGACTTTCCACGTGAGCTTCGTTTTTGGCACCCTCTCTCAAACGCCATGATAATGCTGCACTACAAAAGCAAATATCTGAGAGAGAGCCAAAATGACACCACTTGAATTTCATCCATTGCTCTGAAATCCCCATCTATTCTTGACATTCAAGATTGGGGGAAAAACCAAAAGTAAAGCCAGGGATACAAATACAAAGTGG...

XM_057949099.1
TTTTGGCACCCTCTCTCAAACGCCATGATAATGCTGCACTACAAAAGCAAATATCTGAGAGAGAGCCAAAATGACACCACTTGAATTTCATCCATTGCTCTGAAATCCCCATCTATTCTTGACATTCAAGATTGGGGGAAAAACCAAAAGTAAAGCCAGGGATACAAATACAAAGTGGAACAAACAAAAAAGGTCTAAGCAGAGCACAATGGCTTCTTCATCGGCGGCGAAAATGGCTGCGGTGGAATGGCTGATGGGCT...

CDS

2 records

下载 CDS FASTA

LOC131020337
ATGGCTTCTTCATCGGCGGCGAAAATGGCTGCGGTGGAATGGCTGATGGGCTCGCCTGCTGACGTCAGCGACTATATCGTGCTTCTATGGAAGGCGGTGAGGTCGTATGCGATAGTGCCGCTTTTGAGATTCGCTCTGTACCTCTGCTTGGTGTGGTCGTTCCTGCTGTTTGTGGAGTGGTCTCACATGATGATTCTTGCTGCTCTCGCCAAGTTAATGCGCAACAGGCACGCTAAAAAGTACAAATGGGAGCCATTGAA...

Protein

2 records

下载 Protein FASTA

XP_057805072.1
MASSSAAKMAAVEWLMGSPADVSDYIVLLWKAVRSYAIVPLLRFALYLCLVWSFLLFVEWSHMMILAALAKLMRNRHAKKYKWEPLKDDLEARSLDFPMVLVQIPIYNEIEVYKISIGAACRLSWPVDRLVVQVLDDSTDLVIKDKIEKECMRWASEGINIRYQLRDGRKGYKAGALKEGLKRDYVKECEYVAIFDADFQPEADFLRRAMPVLIHNPEVALVQARWRFVNADECFLTRMQEISLDFQFVIEQQGGSSIHA...

XP_057805082.1
MASSSAAKMAAVEWLMGSPADVSDYIVLLWKAVRSYAIVPLLRFALYLCLVWSFLLFVEWSHMMILAALAKLMRNRHAKKYKWEPLKDDLEARSLDFPMVLVQIPIYNEIEVYKISIGAACRLSWPVDRLVVQVLDDSTDLVIKDKIEKECMRWASEGINIRYQLRDGRKGYKAGALKEGLKRDYVKECEYVAIFDADFQPEADFLRRAMPVLIHNPEVALVQARWRFVNADECFLTRMQEISLDFQFVIEQQGGSSIHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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