当前解析结果
SmilChr01G001826| 统一新 Gene ID | SmilChr01G001826 |
|---|---|
| 名称 | SmilChr01G001826 |
| 描述 | fatty acyl-CoA reductase 3-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 33201879 - 33220567 / - |
| NCBI Gene ID | LOC131021060 |
|---|---|
| GeneID | 131021060 |
| locus_tag | - |
| NCBI Name | LOC131021060 |
| 原始查询 | SmilChr01G001826 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fatty acyl-CoA reductase 3-like |
| 产物 | fatty acyl-CoA reductase 3-like |
| Arabidopsis | AT4G33790 (CER4)Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:829521] identity=52.8; qcov=0.998; evalue=0; confidence=high |
| Rice | Os08g0298700- identity=50.8; qcov=1; evalue=8.94e-177; confidence=high |
| GO | GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01370 (Epimerase); PF03015 (Sterile); PF07993 (NAD_binding_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021060 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057806125.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057806125.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806125.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806125.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806125.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:33202010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,D11 |
Chr1:33202556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,D6 |
Chr1:33202770 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C32,C68 |
Chr1:33202770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr1:33202781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B84,B94,C3,C30 |
Chr1:33202852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:33202949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr1:33203677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B94,C3,C30,D11 |
Chr1:33203939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr1:33204069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:33205053 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B47,D7 |
Chr1:33205055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806125.1PF01370
Epimerase 15-170 aa
PF07993
NAD_binding_4 17-317 aa
PF03015
Sterile 391-491 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806125.1 |
Pfam | PF01370 |
Epimerase | Family | 15 | 170 | 1.1e-08 | 35.6 | NAD dependent epimerase/dehydratase family |
XP_057806125.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 17 | 317 | 2.7e-72 | 243.7 | Male sterility protein |
XP_057806125.1 |
Pfam | PF03015 |
Sterile | Family | 391 | 491 | 2.5e-17 | 63.5 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。