Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001830`

染色体: Chr01 坐标: 33234791-33239008 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001830`
名称	SmilChr01G001830
描述	alcohol-forming fatty acyl-CoA reductase-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	33234791 - 33239008 / `-`

ID 对照

NCBI Gene ID	`LOC131021080`
GeneID	`131021080`
locus_tag	`-`
NCBI Name	`LOC131021080`
原始查询	`SmilChr01G001830`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alcohol-forming fatty acyl-CoA reductase-like
产物	alcohol-forming fatty acyl-CoA reductase-like
Arabidopsis	`AT4G33790` (CER4) Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:829521] identity=59.3; qcov=0.998; evalue=0; confidence=high
Rice	`Os08g0298700` - identity=55; qcov=1; evalue=0; confidence=high
GO	GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01370 (Epimerase); PF03015 (Sterile); PF07993 (NAD_binding_4)
InterPro	-
eggNOG	-
NR	GeneID:131021080

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057806155.1`
2	Peroxisome	过氧化物酶体	0.40000	`XP_057806155.1`
3	Nucleus	细胞核	0.00000	`XP_057806155.1`
4	Chromosome	染色体	0.00000	`XP_057806155.1`
5	Centromere	着丝粒	0.00000	`XP_057806155.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:33234977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B40,B93,C58,C8,C80
`Chr1:33235050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C35,C49,C77
`Chr1:33235370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr1:33235569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr1:33235695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,A2
`Chr1:33235720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr1:33235779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr1:33238380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B123,C45
`Chr1:33238436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:33238597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806155.1

492 aa

246

492

Epimerase

NAD_binding_4

Sterile

PF01370 Epimerase 15-171 aa PF07993 NAD_binding_4 17-318 aa PF03015 Sterile 394-489 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806155.1`	Pfam	`PF01370`	Epimerase	Family	15	171	1.2e-06	28.8	NAD dependent epimerase/dehydratase family
`XP_057806155.1`	Pfam	`PF07993`	NAD_binding_4	Family	17	318	4.9e-75	252.7	Male sterility protein
`XP_057806155.1`	Pfam	`PF03015`	Sterile	Family	394	489	3.1e-15	56.8	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950172.1
GTGCAGATTATAGCTCATTTTTTTGTTAACACCAACATTAAATTAGCAAGTTTCCTATATTATAGTTTTGTACCCCTATTTGTCTATCTATATATATATTATAAGCCTTTCCTTTTTGATACTCCATTGGCAATTTGGCATTCTCTCTCTCTCTCTCACACACACACACACAATCTTATTTGTCAATCATCTTGTTTGTTCAATGGAGTTGGGCAGTATTCTCCAGTTCCTGGAAAACAGGTCCATTCTTGTCACTGGAG...

CDS

1 records

下载 CDS FASTA

LOC131021080
ATGGAGTTGGGCAGTATTCTCCAGTTCCTGGAAAACAGGTCCATTCTTGTCACTGGAGCCACTGGCTTTCTAGCAAAGATTTTTATTGAGAAGATACTGAGAGTACAACCACATGTCAAGAAACTCTATCTTTTGTTGAGAGCTTCCGACGCAAACTCAGCCATGCTACGTTTCAACAACGAGATTATAGGAAAGGAGCTTTTCAAAGTTTTGAAAGAGAAAAATGGGGCGAATATGAGTAGGCTGATTACAGAAAAGGT...

Protein

1 records

下载 Protein FASTA

XP_057806155.1
MELGSILQFLENRSILVTGATGFLAKIFIEKILRVQPHVKKLYLLLRASDANSAMLRFNNEIIGKELFKVLKEKNGANMSRLITEKVRVVAGDITLENLGVKDLSLLEEMLTEIDVVVNLAATTNFDERYDVSLGINTLGARHVLNFSKKCKKLKIMAHVSTAYVSGEREGLILETPYMMGETLNGTRGLDIDAEKKLIEETLKQLKADNYDEDSIKSIMKDLGIQRARKFGWPNTYVFTKAMGEMLLGELKENIPLIII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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