Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001831`

染色体: Chr01 坐标: 33268420-33275205 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001831`
名称	SmilChr01G001831
描述	protein HIRA
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	33268420 - 33275205 / `-`

ID 对照

NCBI Gene ID	`LOC131021083`
GeneID	`131021083`
locus_tag	`-`
NCBI Name	`LOC131021083`
原始查询	`SmilChr01G001831`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein HIRA
产物	protein HIRA
Arabidopsis	`AT3G44530` (HIRA) histone chaperone HIRA-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823578] identity=66.2; qcov=0.938; evalue=0; confidence=high
Rice	`Os09g0567700` (OsWD40-174) - identity=66.5; qcov=0.911; evalue=0; confidence=high
GO	GO:0000417 (HIR complex); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0031491 (nucleosome binding)
KEGG	-
Pfam	PF00400 (WD40); PF07569 (Hira); PF24105 (Beta-prop_CAF1B_HIR1)
InterPro	-
eggNOG	-
NR	GeneID:131021083

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806156.1`
2	Chromosome	染色体	0.20000	`XP_057806157.1`
3	Centromere	着丝粒	0.00000	`XP_057806156.1`
4	Chromatin	染色质	0.00000	`XP_057806156.1`
5	Telomere	端粒	0.00000	`XP_057806156.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:33268924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:33268953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr1:33268972`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr1:33269728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,C38
`Chr1:33270301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr1:33270682`	`AAC`	`A`	2bp_deletion	frameshift_variant	1	A25
`Chr1:33270682`	`AAC`	`A`	2bp_deletion	CDS_variant	1	A25
`Chr1:33270870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:33271043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:33271051`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr1:33271077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:33271132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806156.1

1043 aa

522

1043

WD40

Beta-prop_CAF1B_HIR1

WD40

Hira

PF00400 WD40 11-41 aa PF24105 Beta-prop_CAF1B_HIR1 11-370 aa PF00400 WD40 57-92 aa PF00400 WD40 116-153 aa PF00400 WD40 158-194 aa PF00400 WD40 334-361 aa PF07569 Hira 680-876 aa

XP_057806157.1

890 aa

445

890

WD40

Hira

PF00400 WD40 5-41 aa PF00400 WD40 181-208 aa PF07569 Hira 527-723 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806156.1`	Pfam	`PF00400`	WD40	Repeat	11	41	1.3e-37	127.3	WD domain, G-beta repeat
`XP_057806156.1`	Pfam	`PF24105`	Beta-prop_CAF1B_HIR1	Repeat	11	370	2.7e-55	188.6	CAF1B/HIR1 beta-propeller domain
`XP_057806156.1`	Pfam	`PF00400`	WD40	Repeat	57	92	1.3e-37	127.3	WD domain, G-beta repeat
`XP_057806156.1`	Pfam	`PF00400`	WD40	Repeat	116	153	1.3e-37	127.3	WD domain, G-beta repeat
`XP_057806156.1`	Pfam	`PF00400`	WD40	Repeat	158	194	1.3e-37	127.3	WD domain, G-beta repeat
`XP_057806156.1`	Pfam	`PF00400`	WD40	Repeat	334	361	1.3e-37	127.3	WD domain, G-beta repeat
`XP_057806156.1`	Pfam	`PF07569`	Hira	Repeat	680	876	3.1e-51	174.8	TUP1-like enhancer of split
`XP_057806157.1`	Pfam	`PF00400`	WD40	Repeat	5	41	8.1e-14	52.1	WD domain, G-beta repeat
`XP_057806157.1`	Pfam	`PF00400`	WD40	Repeat	181	208	8.1e-14	52.1	WD domain, G-beta repeat
`XP_057806157.1`	Pfam	`PF07569`	Hira	Repeat	527	723	2.6e-51	175.1	TUP1-like enhancer of split

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950173.1
TCTTTTCTTTCTTTGGATGAATCGATTCTCTCTTCAATAACTGAACCCTTTTCAGTGTGTTGCTTCACTCTCAATCTTCCATCAAAGATTGGACCGTTAAAAGGAAATACTCCATATTAGCAATAAAGAAATCATTTTTATTGCTCTCAACTCATTGAATTTTTTTCCCTCTATGCCTGTTCTTCGTAGAAAATTCTTGCACTGATTTACTTTACCGACACAAATTCTTACTAGGGTTTTTCTCAAGCTGGTCACCGAAA...

XM_057950174.1
CATCTGGATCTGATGATCAAGTTATTCTTGTTCATGAGCGGAAGCCTGGCTCGGGAACCACAGAATTTGGCAGCGGAGAGCCGCCTGATGTTGAGAACTGGAAAGTTGCCATGACTTTGAGAGGGCACACTGCTGATGTGTAGGTGGATCTTAATTGGTCTCCTGATGACTCGACATTGGCCAGTGGGAGTTTGGATAATACCATTCATGTTTGGGACATGAGTAACGGAATCTGCACTGCAGTTCTTCGTGGTCATTCT...

CDS

2 records

下载 CDS FASTA

LOC131021083
ATGATAGCAGAGAAACCCAGTTGGATTAAGCATGGTGGCACTCAGATTTTCTCCATTGATATTCAGCCTGGTGGCCTCAGGTTTGCCACTGGTGGTGGTGATCATAAGGTTCGCATCTGGAACACAAAATCTGTTGGCAGAGAGATGCAAACTGATGATTCAGCTTCAAAGCTTCTGGCAACTCTGCGGGACCATTTTGGTTCTGTTAACTGCGTTAGGTGGGCTAAGCATGGGCGGTATATTGCATCTGGATCTGATGA...

LOC131021083
ATGAGTAACGGAATCTGCACTGCAGTTCTTCGTGGTCATTCTAGTCTCGTAAAGGGTGTAGCTTGGGATCCTATTGGGTCATTTATAGCTAGTCAATCGGACGACAAGACTGTCATAATTTGGCGAACTAGTGACTGGAGCCTTGCTCATAGAACTGATGGTCACTGGGCTAAATCTCTTGGCTCCACCTTCTTCAGACGGCTTGACTGGTCACCGTGCGGTCATTTTATAACTACGACTCATGGTTTTCAGAAGCCCAG...

Protein

2 records

下载 Protein FASTA

XP_057806156.1
MIAEKPSWIKHGGTQIFSIDIQPGGLRFATGGGDHKVRIWNTKSVGREMQTDDSASKLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILVHERKPGSGTTEFGSGEPPDVENWKVAMTLRGHTADVVDLNWSPDDSTLASGSLDNTIHVWDMSNGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLDWSPCGHFITTTHGFQKPRHSAPVLERGEWSATFDFLGH...

XP_057806157.1
MSNGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLDWSPCGHFITTTHGFQKPRHSAPVLERGEWSATFDFLGHNAPIIVAKFNHSMFRRTPSNSEDLKTSLVGWSNGSSKVEGKDLQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLTWSPDGYSVFACSLDGTVATFHFDVSEIGYKLTDAELDDLKRNRYGDVRGRQGNLAETPAQLLLEAASAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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