Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001833`

染色体: Chr01 坐标: 33278872-33283359 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001833`
名称	SmilChr01G001833
描述	subtilisin-like serine-protease S
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	33278872 - 33283359 / `-`

ID 对照

NCBI Gene ID	`LOC131021103`
GeneID	`131021103`
locus_tag	`-`
NCBI Name	`LOC131021103`
原始查询	`SmilChr01G001833`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	subtilisin-like serine-protease S
产物	subtilisin-like serine-protease S
Arabidopsis	`AT2G04160` (AIR3) Subtilisin-like serine endopeptidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:814953] identity=43.2; qcov=1.02; evalue=0; confidence=medium
Rice	`Os06g0624100` (OsSub51) - identity=43.5; qcov=0.977; evalue=0; confidence=medium
GO	GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis)
KEGG	-
Pfam	PF00082 (Peptidase_S8); PF02225 (PA); PF05922 (Inhibitor_I9); PF17766 (fn3_6)
InterPro	-
eggNOG	-
NR	GeneID:131021103

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057806176.1`
2	Cell wall	细胞壁	0.40000	`XP_057806176.1`
3	Vacuole	液泡	0.20000	`XP_057806176.1`
4	Nucleus	细胞核	0.00000	`XP_057806176.1`
5	Chromosome	染色体	0.00000	`XP_057806176.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:33279383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr1:33279429`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr1:33279475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B47,D7
`Chr1:33279739`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B47,D7
`Chr1:33279919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B35,B95,C34
`Chr1:33280302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:33280303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:33280306`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:33280805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr1:33280927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr1:33281163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:33281182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806176.1

760 aa

380

760

Inhibitor_I9

Peptidase_S8

fn3_6

PF05922 Inhibitor_I9 28-106 aa PF00082 Peptidase_S8 131-587 aa PF02225 PA 387-461 aa PF17766 fn3_6 657-750 aa

XP_057806178.1

729 aa

364

729

Inhibitor_I9

Peptidase_S8

fn3_6

PF05922 Inhibitor_I9 7-75 aa PF00082 Peptidase_S8 100-556 aa PF02225 PA 356-430 aa PF17766 fn3_6 626-719 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806176.1`	Pfam	`PF05922`	Inhibitor_I9	Domain	28	106	2.4e-11	44.9	Peptidase inhibitor I9
`XP_057806176.1`	Pfam	`PF00082`	Peptidase_S8	Domain	131	587	2.3e-45	155.9	Subtilase family
`XP_057806176.1`	Pfam	`PF02225`	PA	Domain	387	461	2.1e-07	31.6	PA domain
`XP_057806176.1`	Pfam	`PF17766`	fn3_6	Domain	657	750	4.1e-30	104.6	Fibronectin type-III domain
`XP_057806178.1`	Pfam	`PF05922`	Inhibitor_I9	Domain	7	75	1.6e-08	35.8	Peptidase inhibitor I9
`XP_057806178.1`	Pfam	`PF00082`	Peptidase_S8	Domain	100	556	2.1e-45	156.0	Subtilase family
`XP_057806178.1`	Pfam	`PF02225`	PA	Domain	356	430	2e-07	31.8	PA domain
`XP_057806178.1`	Pfam	`PF17766`	fn3_6	Domain	626	719	3.9e-30	104.7	Fibronectin type-III domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950195.1
CCCGATTGAGCAAAAGCTGCAGGTGGCATTTTCTTTTTTCTGGTGCAGTTGATATCATTCTAGCAGCAAACGTGATTTCTGGAATATCTAATGTGATGGAGATGAGACTGTGCTCTTATCGCCTGCAAAGCATTATGTAGTTTACATGGGGGAGCACTCATACAAGGACTCAGAATCAGTAATCACAGCTAACCATGAGATGCTTACCTCAGTAATGGGAAGTCATGAGGGGGCACAGGGTGCAGCGGTCCACCATTATA...

XM_057950193.1
TTTTCTCAAAATCAAAATCAATTGTTCACTACATTCCAGCAGCATGGATGTGGTGAAACTGTTTAGCTTACTTCTCTTGTTCAGATTTGCATTAGCTAATGGAGATGCATCTAATAGAAAGCATTATGTAGTTTACATGGGGGAGCACTCATACAAGGACTCAGAATCAGTAATCACAGCTAACCATGAGATGCTTACCTCAGTAATGGGAAGTCATGAGGGGGCACAGGGTGCAGCGGTCCACCATTATACGAAAACCT...

CDS

2 records

下载 CDS FASTA

LOC131021103
ATGGATGTGGTGAAACTGTTTAGCTTACTTCTCTTGTTCAGATTTGCATTAGCTAATGGAGATGCATCTAATAGAAAGCATTATGTAGTTTACATGGGGGAGCACTCATACAAGGACTCAGAATCAGTAATCACAGCTAACCATGAGATGCTTACCTCAGTAATGGGAAGTCATGAGGGGGCACAGGGTGCAGCGGTCCACCATTATACGAAAACCTTCAGAGGTTTCTCTGCAATGCTCACCTTGGATCAAGCAAGAGA...

LOC131021103
ATGGGGGAGCACTCATACAAGGACTCAGAATCAGTAATCACAGCTAACCATGAGATGCTTACCTCAGTAATGGGAAGTCATGAGGGGGCACAGGGTGCAGCGGTCCACCATTATACGAAAACCTTCAGAGGTTTCTCTGCAATGCTCACCTTGGATCAAGCAAGAGAACTCCAAGTGAGTGATTCAGTAGTATCTGTGTTTGAGAGCAAGACAAACCACATCCACACAACACACTCGTGGGATTTTTTGGGTATAAGCAA...

Protein

2 records

下载 Protein FASTA

XP_057806176.1
MDVVKLFSLLLLFRFALANGDASNRKHYVVYMGEHSYKDSESVITANHEMLTSVMGSHEGAQGAAVHHYTKTFRGFSAMLTLDQARELQVSDSVVSVFESKTNHIHTTHSWDFLGISNLEKSHQALMDSTSDTIIGVIDSGVWPESKSFNDYGLGPVPAKFKGVCSTGENFTLSNCNRKIVGARFYYKGFIAESGPLESFNETFFLSARDADGHGTHTASTIAGSVVPDISLYGIGKGTARGGAPGSRLAIYKACWFDFC...

XP_057806178.1
MGEHSYKDSESVITANHEMLTSVMGSHEGAQGAAVHHYTKTFRGFSAMLTLDQARELQVSDSVVSVFESKTNHIHTTHSWDFLGISNLEKSHQALMDSTSDTIIGVIDSGVWPESKSFNDYGLGPVPAKFKGVCSTGENFTLSNCNRKIVGARFYYKGFIAESGPLESFNETFFLSARDADGHGTHTASTIAGSVVPDISLYGIGKGTARGGAPGSRLAIYKACWFDFCSDADILSAIDDAVSDGVDVISMSLGPDPPQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器