当前解析结果
SmilChr01G001838| 统一新 Gene ID | SmilChr01G001838 |
|---|---|
| 名称 | SmilChr01G001838 |
| 描述 | protein ADP-ribosyltransferase PARP3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 33316125 - 33320981 / - |
| NCBI Gene ID | LOC131021132 |
|---|---|
| GeneID | 131021132 |
| locus_tag | - |
| NCBI Name | LOC131021132 |
| 原始查询 | SmilChr01G001838 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ADP-ribosyltransferase PARP3 |
| 产物 | protein ADP-ribosyltransferase PARP3 |
| Arabidopsis | AT5G22470 (AT5G22470)poly ADP-ribose polymerase 3 [Source:NCBI gene (formerly Entrezgene);Acc:832308] identity=66.4; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0530600 (OsEnS-38)- identity=60.6; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0003950 (NAD+ poly-ADP-ribosyltransferase activity); GO:0008270 (zinc ion binding) |
| KEGG | smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00533 (BRCT); PF00644 (PARP); PF02877 (PARP_reg); PF05406 (WGR); PF08063 (Zn_ribbon_PADR1); PF21728 (PADR1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021132 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806205.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057806205.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057806218.1 |
| 4 | Chromosome | 染色体 | 0.20000 | XP_057806205.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057806218.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:33316465 |
C |
CT |
1bp_insertion | frameshift_variant | 11 | A1,A8,B19,B56,B9,B96,C27,C38,C50,C55,C79 |
Chr1:33316529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr1:33316538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr1:33316682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:33316791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:33316891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr1:33316925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B122,B46,B55 |
Chr1:33317190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:33317505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:33317667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B113,B25,C61 |
Chr1:33318312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B140,B40,B78,C71 |
Chr1:33318400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806205.1PF21728
PADR1_N 65-121 aa
PF08063
Zn_ribbon_PADR1 123-162 aa
PF00533
BRCT 199-276 aa
PF05406
WGR 348-426 aa
PF02877
PARP_reg 465-598 aa
PF00644
PARP 613-815 aa
XP_057806212.1PF21728
PADR1_N 65-121 aa
PF08063
Zn_ribbon_PADR1 123-162 aa
PF00533
BRCT 199-272 aa
PF05406
WGR 344-422 aa
PF02877
PARP_reg 461-594 aa
PF00644
PARP 609-811 aa
XP_057806218.1PF21728
PADR1_N 1-30 aa
PF08063
Zn_ribbon_PADR1 32-71 aa
PF00533
BRCT 108-185 aa
PF05406
WGR 257-335 aa
PF02877
PARP_reg 374-507 aa
PF00644
PARP 522-724 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806205.1 |
Pfam | PF21728 |
PADR1_N | Domain | 65 | 121 | 7.9e-16 | 58.9 | PADR1, N-terminal helical domain |
XP_057806205.1 |
Pfam | PF08063 |
Zn_ribbon_PADR1 | Domain | 123 | 162 | 7.3e-12 | 45.6 | PADR1 domain, zinc ribbon fold |
XP_057806205.1 |
Pfam | PF00533 |
BRCT | Domain | 199 | 276 | 3e-11 | 44.1 | BRCA1 C Terminus (BRCT) domain |
XP_057806205.1 |
Pfam | PF05406 |
WGR | Domain | 348 | 426 | 5.8e-08 | 33.5 | WGR domain |
XP_057806205.1 |
Pfam | PF02877 |
PARP_reg | Domain | 465 | 598 | 2.7e-22 | 80.0 | Poly(ADP-ribose) polymerase, regulatory domain |
XP_057806205.1 |
Pfam | PF00644 |
PARP | Domain | 613 | 815 | 2.8e-52 | 177.9 | Poly(ADP-ribose) polymerase catalytic domain |
XP_057806212.1 |
Pfam | PF21728 |
PADR1_N | Domain | 65 | 121 | 7.9e-16 | 58.9 | PADR1, N-terminal helical domain |
XP_057806212.1 |
Pfam | PF08063 |
Zn_ribbon_PADR1 | Domain | 123 | 162 | 7.2e-12 | 45.6 | PADR1 domain, zinc ribbon fold |
XP_057806212.1 |
Pfam | PF00533 |
BRCT | Domain | 199 | 272 | 2.8e-08 | 34.5 | BRCA1 C Terminus (BRCT) domain |
XP_057806212.1 |
Pfam | PF05406 |
WGR | Domain | 344 | 422 | 6.8e-08 | 33.2 | WGR domain |
XP_057806212.1 |
Pfam | PF02877 |
PARP_reg | Domain | 461 | 594 | 2.6e-22 | 80.0 | Poly(ADP-ribose) polymerase, regulatory domain |
XP_057806212.1 |
Pfam | PF00644 |
PARP | Domain | 609 | 811 | 2.8e-52 | 177.9 | Poly(ADP-ribose) polymerase catalytic domain |
XP_057806218.1 |
Pfam | PF21728 |
PADR1_N | Domain | 1 | 30 | 2.1e-09 | 38.4 | PADR1, N-terminal helical domain |
XP_057806218.1 |
Pfam | PF08063 |
Zn_ribbon_PADR1 | Domain | 32 | 71 | 6.4e-12 | 45.8 | PADR1 domain, zinc ribbon fold |
XP_057806218.1 |
Pfam | PF00533 |
BRCT | Domain | 108 | 185 | 2.7e-11 | 44.2 | BRCA1 C Terminus (BRCT) domain |
XP_057806218.1 |
Pfam | PF05406 |
WGR | Domain | 257 | 335 | 7e-08 | 33.2 | WGR domain |
XP_057806218.1 |
Pfam | PF02877 |
PARP_reg | Domain | 374 | 507 | 2.4e-22 | 80.2 | Poly(ADP-ribose) polymerase, regulatory domain |
XP_057806218.1 |
Pfam | PF00644 |
PARP | Domain | 522 | 724 | 3.3e-52 | 177.6 | Poly(ADP-ribose) polymerase catalytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。