Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001842`

染色体: Chr01 坐标: 33362876-33369144 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001842`
名称	SmilChr01G001842
描述	transcription factor TGA9
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	33362876 - 33369144 / `-`

ID 对照

NCBI Gene ID	`LOC131021183`
GeneID	`131021183`
locus_tag	`-`
NCBI Name	`LOC131021183`
原始查询	`SmilChr01G001842`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor TGA9
产物	transcription factor TGA9
Arabidopsis	`AT1G08320` (TGA9) bZIP transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:837353] identity=62.1; qcov=1.07; evalue=0; confidence=high
Rice	`Os11g0152700` (OsbZIP79) transcription factor TGAL4-like [Source:NCBI gene (formerly Entrezgene);Acc:4349800] identity=52.6; qcov=1.07; evalue=3.25e-160; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2); PF14144 (DOG1)
InterPro	-
eggNOG	-
NR	GeneID:131021183

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806261.1`
2	Chromosome	染色体	0.00000	`XP_057806261.1`
3	Centromere	着丝粒	0.00000	`XP_057806261.1`
4	Chromatin	染色质	0.00000	`XP_057806261.1`
5	Telomere	端粒	0.00000	`XP_057806261.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:33363118`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:33364379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr1:33366474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,A4,C32,C68,C87
`Chr1:33367470`	`GA`	`G`	1bp_deletion	frameshift_variant	2	B44,B67
`Chr1:33367470`	`GA`	`G`	1bp_deletion	CDS_variant	2	B44,B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806261.1

477 aa

238

477

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 172-214 aa PF00170 bZIP_1 173-208 aa PF14144 DOG1 255-330 aa

XP_057806270.1

462 aa

231

462

bZIP_2

bZIP_1

DOG1

PF07716 bZIP_2 158-199 aa PF00170 bZIP_1 159-193 aa PF14144 DOG1 240-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806261.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	172	214	9.1e-06	26.3	Basic region leucine zipper
`XP_057806261.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	173	208	2.1e-07	31.6	bZIP transcription factor
`XP_057806261.1`	Pfam	`PF14144`	DOG1	Family	255	330	6.3e-33	113.5	Seed dormancy control
`XP_057806270.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	158	199	2.6e-05	24.9	Basic region leucine zipper
`XP_057806270.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	159	193	1.9e-07	31.8	bZIP transcription factor
`XP_057806270.1`	Pfam	`PF14144`	DOG1	Family	240	315	5.5e-33	113.7	Seed dormancy control

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950278.1
GTCAGTGATTCTAGTGGTTTCCTGCCCAAGACCCCACCTTTTCTTCTAGTATATTTTATTACACTACTAACTGAATGTTGCTTATTTTTCATGGCACAAATTTTCAATCCTTTTCTACATTTTTTTTAAAATTTAACTTTCTGTTGCAAACCCCACAAAATAAGCCTGGGTTGTCTAGGACAAGATTTTGTGTACCCATGGTTTGAGTTTCAATTCTTCTGATACTACTAATTATTACACTCCTTCTTCATGCCCACACG...

XM_057950287.1
TGGCACAAATTTTCAATCCTTTTCTACATTTTTTTTAAAATTTAACTTTCTGTTGCAAACCCCACAAAATAAGCCTGGGTTGTCTAGGACAAGATTTTGTGTACCCATGGTTTGAGTTTCAATTCTTCTGATACTACTAATTATTACACTCCTTCTTCATGCCCACACGCGCGAGGCGAGACTATAAAGTAGAGAGAGGGAAAATTATCAAAGAGAATAATCAGACGGATTTCTTCATAGAGAAGGAGAGAAAAGAAAGC...

CDS

2 records

下载 CDS FASTA

LOC131021183
ATGGCGAGTCACAGAGTCGGTGAGGCAGACTCGGGAGCTCCACACCACCACCACATCCCCTACGCGATTCCTCACATGCTTCACCACCCCAACAACTCTACTTTCATAAATCAAGAAGGGTCTGCTTTTGATTTCGGAGAGCTTGAGGAGGCCATTATTCTGCAAGGAGTTAAGATCAATAATGATGACAAAAAACAACCTTTATACACCGCAATCAGGCCTGCTGCAACTCTGGATATGTTCCCTTCTTGGCCTATGAG...

Protein

2 records

下载 Protein FASTA

XP_057806261.1
MASHRVGEADSGAPHHHHIPYAIPHMLHHPNNSTFINQEGSAFDFGELEEAIILQGVKINNDDKKQPLYTAIRPAATLDMFPSWPMRFQQHTPRGSSKSGEESTDSGSAVNTLSNTPESPSDHRQPPPPPPQMDAAGGIDSPRLSGSHSQPAAKPAPEKRRGPGSNSDKVLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLAQLEQDLQRARSQGLFLGGGGAASGSISSGGAIFDMEYSRWLDDDHRHMSELR...

XP_057806270.1
MASHRVGEADSGAPHHHHIPYAIPHMLHHPNNSTFINQEGSAFDFGELEEAIILQGVKINNDDKKQPLYTAIRPAATLDMFPSWPMRFQQHTPRGSSKSGEESTDSGSAVNTLSNTPESPSDHRQPPPPPPQMDAAGGIDSPRLSGSHSQPAAKPAPEKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLAQLEQDLQRARSQGLFLGGGGAASGSISSGGAIFDMEYSRWLDDDHRHMSELRTALQAHLSDGDLRVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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