Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001873`

染色体: Chr01 坐标: 33756728-33760494 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001873`
名称	SmilChr01G001873
描述	mRNA-decapping enzyme-like protein
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	33756728 - 33760494 / `+`

ID 对照

NCBI Gene ID	`LOC131021447`
GeneID	`131021447`
locus_tag	`-`
NCBI Name	`LOC131021447`
原始查询	`SmilChr01G001873`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mRNA-decapping enzyme-like protein
产物	mRNA-decapping enzyme-like protein
Arabidopsis	`AT1G08370` (DCP1) decapping 1 [Source:NCBI gene (formerly Entrezgene);Acc:837357] identity=57.9; qcov=1.06; evalue=8.89e-127; confidence=high
Rice	`Os07g0249600` (P0021G06.113) - identity=51.4; qcov=1.11; evalue=5.62e-115; confidence=high
GO	GO:0000290 (deadenylation-dependent decapping of nuclear-transcribed mRNA); GO:0000932 (P-body); GO:0003729 (mRNA binding); GO:0008047 (enzyme activator activity); GO:0031087 (deadenylation-independent decapping of nuclear-transcribed mRNA); GO:0043085 (positive regulation of catalytic activity)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF06058 (DCP1)
InterPro	-
eggNOG	-
NR	GeneID:131021447

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806621.1`
2	Cytosol	细胞质基质	0.80000	`XP_057806621.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057806621.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057806621.1`
5	P-body	P-body	0.60000	`XP_057806621.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:33758907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,A8,B19,C55,D9
`Chr1:33758934`	`C`	`CA`	1bp_insertion	frameshift_variant	243	A1,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B78,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D11,D2,D3,D4,D5,D6,D7,D8
`Chr1:33758995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B124,B18,B54,B85
`Chr1:33759002`	`C`	`CT`	1bp_insertion	frameshift_variant	229	A11,A13,A14,A16,A18,A19,A2,A20,A21,A22,A23,A25,A3,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B104,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B115,B117,B118,B119,B120,B122,B123,B124,B125,B126,B127,B128,B129,B13,B132,B133,B135,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B3,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B6,B61,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B78,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D11,D2,D3,D4,D5,D6,D7,D8
`Chr1:33759021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B91,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806621.1

367 aa

184

367

DCP1

PF06058 DCP1 18-131 aa

XP_057806630.1

355 aa

178

355

DCP1

PF06058 DCP1 18-131 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806621.1`	Pfam	`PF06058`	DCP1	Domain	18	131	1.5e-45	154.6	Dcp1-like decapping family
`XP_057806630.1`	Pfam	`PF06058`	DCP1	Domain	18	131	1.4e-45	154.7	Dcp1-like decapping family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950638.1
ATCTGAATATAAGCGGCGAGTTGAGATAAACTATTCTCCACAAGAGTTTTGAGTTAGTTCTGCTGAAAAAAATAATTTAGGGCTCTCTCTCTCTACAGACGCAAGGAGGAGTGAGATAGAGCCTGAAACGATGTCGCAGAACGGGAAATTGATGCCCAATCTCGACGAGAAGACCACCAAAGTCCTCAACCTGACGGTGCTGCAGCGGATCGATCCATTCGTCGAGGAGATTCTCATCACCGCCGCCCACGTCACCTTCT...

XM_057950647.1
ATCTGAATATAAGCGGCGAGTTGAGATAAACTATTCTCCACAAGAGTTTTGAGTTAGTTCTGCTGAAAAAAATAATTTAGGGCTCTCTCTCTCTACAGACGCAAGGAGGAGTGAGATAGAGCCTGAAACGATGTCGCAGAACGGGAAATTGATGCCCAATCTCGACGAGAAGACCACCAAAGTCCTCAACCTGACGGTGCTGCAGCGGATCGATCCATTCGTCGAGGAGATTCTCATCACCGCCGCCCACGTCACCTTCT...

CDS

2 records

下载 CDS FASTA

LOC131021447
ATGTCGCAGAACGGGAAATTGATGCCCAATCTCGACGAGAAGACCACCAAAGTCCTCAACCTGACGGTGCTGCAGCGGATCGATCCATTCGTCGAGGAGATTCTCATCACCGCCGCCCACGTCACCTTCTACGAATTTAACATCGACACTAGCCAATGGAGTCGGAAGGATGTGGAAGGTTCGCTTTTTGTCGTGAAAAGGAATACCCAGCCAAGGTTCCAGTTTATAGTAATGAACAGACGGAATACTGATAATCTAGT...

Protein

2 records

下载 Protein FASTA

XP_057806621.1
MSQNGKLMPNLDEKTTKVLNLTVLQRIDPFVEEILITAAHVTFYEFNIDTSQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNASQEVNGIWFYNARECEEVANLFSRILNAYSKVPTKSKVSSVKSEFEELEAVPTLAVMDGPLEPTSSIANATEVSDDPSFINFFSNAMNIGAAPNTAISGQPFNPSATVIPSSIPQNVSLPTLTTAQPPSNLSASTPIMSILENTERTTTQRS...

XP_057806630.1
MSQNGKLMPNLDEKTTKVLNLTVLQRIDPFVEEILITAAHVTFYEFNIDTSQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNASQEVNGIWFYNARECEEVANLFSRILNAYSKVPTKSKVSSVKSEFEELEAVPTLAVMDGPLEPTSSIANATENAMNIGAAPNTAISGQPFNPSATVIPSSIPQNVSLPTLTTAQPPSNLSASTPIMSILENTERTTTQRSADLVKPSTFFSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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