Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001900`

染色体: Chr01 坐标: 34102664-34108061 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001900`
名称	SmilChr01G001900
描述	proline--tRNA ligase, cytoplasmic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	34102664 - 34108061 / `-`

ID 对照

NCBI Gene ID	`LOC131021662`
GeneID	`131021662`
locus_tag	`-`
NCBI Name	`LOC131021662`
原始查询	`SmilChr01G001900`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	proline--tRNA ligase, cytoplasmic-like
产物	proline--tRNA ligase%2C cytoplasmic-like
Arabidopsis	`AT3G62120` (AT3G62120) Class II aaRS and biotin synthetases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825385] identity=82.4; qcov=1; evalue=0; confidence=high
Rice	`Os12g0443700` - identity=80.5; qcov=1; evalue=0; confidence=high
GO	GO:0004827 (proline-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006433 (prolyl-tRNA aminoacylation); GO:0017101 (aminoacyl-tRNA synthetase multienzyme complex)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00587 (tRNA-synt_2b); PF03129 (HGTP_anticodon); PF09180 (ProRS-C_1)
InterPro	-
eggNOG	-
NR	GeneID:131021662

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806897.1`
2	Cytosol	细胞质基质	1.00000	`XP_057806897.1`
3	Nucleus	细胞核	0.00000	`XP_057806897.1`
4	Chromosome	染色体	0.00000	`XP_057806897.1`
5	Centromere	着丝粒	0.00000	`XP_057806897.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:34106400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806897.1

525 aa

262

525

tRNA-synt_2b

HGTP_anticodon

ProRS-C_1

PF00587 tRNA-synt_2b 141-310 aa PF03129 HGTP_anticodon 329-424 aa PF09180 ProRS-C_1 452-525 aa

XP_057806905.1

515 aa

258

515

tRNA-synt_2b

HGTP_anticodon

ProRS-C_1

PF00587 tRNA-synt_2b 131-300 aa PF03129 HGTP_anticodon 319-414 aa PF09180 ProRS-C_1 442-515 aa

XP_057806913.1

461 aa

230

461

tRNA-synt_2b

HGTP_anticodon

ProRS-C_1

PF00587 tRNA-synt_2b 77-246 aa PF03129 HGTP_anticodon 265-360 aa PF09180 ProRS-C_1 388-461 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806897.1`	Pfam	`PF00587`	tRNA-synt_2b	Domain	141	310	3.9e-22	79.9	tRNA synthetase class II core domain (G, H, P, S and T)
`XP_057806897.1`	Pfam	`PF03129`	HGTP_anticodon	Domain	329	424	7.2e-22	78.1	Anticodon binding domain
`XP_057806897.1`	Pfam	`PF09180`	ProRS-C_1	Domain	452	525	3.5e-24	85.5	Prolyl-tRNA synthetase, C-terminal
`XP_057806905.1`	Pfam	`PF00587`	tRNA-synt_2b	Domain	131	300	3.8e-22	79.9	tRNA synthetase class II core domain (G, H, P, S and T)
`XP_057806905.1`	Pfam	`PF03129`	HGTP_anticodon	Domain	319	414	6.7e-22	78.2	Anticodon binding domain
`XP_057806905.1`	Pfam	`PF09180`	ProRS-C_1	Domain	442	515	1.1e-24	87.0	Prolyl-tRNA synthetase, C-terminal
`XP_057806913.1`	Pfam	`PF00587`	tRNA-synt_2b	Domain	77	246	3.2e-22	80.1	tRNA synthetase class II core domain (G, H, P, S and T)
`XP_057806913.1`	Pfam	`PF03129`	HGTP_anticodon	Domain	265	360	5.8e-22	78.4	Anticodon binding domain
`XP_057806913.1`	Pfam	`PF09180`	ProRS-C_1	Domain	388	461	1.1e-24	87.0	Prolyl-tRNA synthetase, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057950914.1
ACGGGTTGCAAATTCGTAGTTGCTTCTGCGAGGTTAAAGTAGTAAATAGGTAGACAGAGCTAAATAAAAATAGGGGACACTTCTCTTTTGACTTTTGAAGAATAAGGATTGAAAGCCTAAACCTCTAATTCTCTCCATCGCCTCCTCCTCTTCACTGCTCGCGGCGGCGCTTCCGCCGTTGTTCAGAGAGCACGATTTGAGCTTTGAAGGTCTTTTGTCATGGCCGGTAAGGATGCGAAGAGTTCTAAAGAGGCGAAAGG...

XM_057950922.1
AGTAAATAGGTAGACAGAGCTAAATAAAAATAGGGGACACTTCTCTTTTGACTTTTGAAGAATAAGGATTGAAAGCCTAAACCTCTAATTCTCTCCATCGCCTCCTCCTCTTCACTGCTCGCGGCGGCGCTTCCGCCGTTGTTCAGAGAGCACGATTTGAGCTTTGAAGGTCTTTTGTCATGGCCGGTAAGGATGCGAAGAGTTCTAAAGAGGCGAAAGGTTCTAAAGAGGCGAAAGAGGGGAAGAAGAAGGAAGTGAAG...

CDS

3 records

下载 CDS FASTA

LOC131021662
ATGGCCGGTAAGGATGCGAAGAGTTCTAAAGAGGCGAAAGGTTCTAAAGAGGCGAAAGAGGGGAAGAAGAAGGAAGTGAAGAAAGAGACTGGATTGGGTCTCTCTTATAAGAAGGATGAGAACTTCGGAGAATGGTACTCTGAGGTTGTTGTTAATGGGGAAATGATTGAATACTATGACATATCAGGCTGTTACATTCTGCGACCATGGGCAATGTCGATTTGGGAGATTATGCATAACTTCTTTGATGCTGAAATCAA...

LOC131021662
ATGGCCGGTAAGGATGCGAAGAGTTCTAAAGAGGCGAAAGGTTCTAAAGAGGCGAAAGGTTCTAAAGACGCAAATGTCTCTGGCTCCAAGGGGAAGAAGAAGGAAGTGAAGAAAGAGACTGGATTGGGTCTCTCTTATAAGAAGGATGAGAACTTCGGAGAATGGTACTCTGAGGTTGTTGTTAATGGGGAAATGATTGAATACTATGACATATCAGGCTGTTACATTCTGCGACCATGGGCAATGTCGATTTGGGAGAT...

Protein

3 records

下载 Protein FASTA

XP_057806897.1
MAGKDAKSSKEAKGSKEAKGSKDANVSGSKGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYILRPWAMSIWEIMHNFFDAEIKKMNIKNCYFPLFVSSTVLQKEKDHIEGFAPEVAWVTKSGESELEVPIAIRPTSETVMYPYFSKWIRGHRDLPLRLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLDILELYRRIYEEFLAVPVIKGKKSEHEKFAGGLYTTTVEAFVPNT...

XP_057806905.1
MAGKDAKSSKEAKGSKEAKEGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYILRPWAMSIWEIMHNFFDAEIKKMNIKNCYFPLFVSSTVLQKEKDHIEGFAPEVAWVTKSGESELEVPIAIRPTSETVMYPYFSKWIRGHRDLPLRLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLDILELYRRIYEEFLAVPVIKGKKSEHEKFAGGLYTTTVEAFVPNTGRGVQGATSH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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