Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001953`

染色体: Chr01 坐标: 34739024-34742108 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001953`
名称	SmilChr01G001953
描述	uncharacterized SmilChr01G001953
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	34739024 - 34742108 / `-`

ID 对照

NCBI Gene ID	`LOC131022133`
GeneID	`131022133`
locus_tag	`-`
NCBI Name	`LOC131022133`
原始查询	`SmilChr01G001953`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823541]; symbol=AT3G44190; hit=AT3G44190; species=arabidopsis; confidence=high
产物	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823541]; symbol=AT3G44190; hit=AT3G44190; species=arabidopsis; confidence=high
Arabidopsis	`AT3G44190` (AT3G44190) FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823541] identity=64.1; qcov=0.997; evalue=2.91e-146; confidence=high
Rice	`Os02g0150300` - identity=54.8; qcov=0.981; evalue=1.09e-129; confidence=high
GO	GO:0004174 (electron-transferring-flavoprotein dehydrogenase activity); GO:0005737 (cytoplasm); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	-
Pfam	PF00070 (Pyr_redox); PF07992 (Pyr_redox_2)
InterPro	-
eggNOG	-
NR	GeneID:131022133

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057807539.1`
2	Cytosol	细胞质基质	0.40000	`XP_057807531.1`
3	Lipid droplet	脂滴	0.40000	`XP_057807539.1`
4	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057807531.1`
5	Mitochondrion membrane	线粒体膜	0.20000	`XP_057807539.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:34739271`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B130,B72,C41
`Chr1:34739621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:34739694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B47,D7
`Chr1:34739737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:34739876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr1:34741667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B61,C45,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807531.1

368 aa

184

368

Pyr_redox_2

Pyr_redox

PF07992 Pyr_redox_2 14-290 aa PF00070 Pyr_redox 138-201 aa

XP_057807539.1

316 aa

158

316

Pyr_redox_2

Pyr_redox

PF07992 Pyr_redox_2 38-238 aa PF00070 Pyr_redox 86-149 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807531.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	14	290	3.2e-36	126.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057807531.1`	Pfam	`PF00070`	Pyr_redox	Domain	138	201	7.8e-11	43.1	Pyridine nucleotide-disulphide oxidoreductase
`XP_057807539.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	38	238	1.5e-31	110.7	Pyridine nucleotide-disulphide oxidoreductase
`XP_057807539.1`	Pfam	`PF00070`	Pyr_redox	Domain	86	149	3.3e-07	31.4	Pyridine nucleotide-disulphide oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951548.1
ATAGCAGTTGATTTTTCTTCAACGTGAAGTGGGCCCACATTGTCATCTGAAAATGGTAAGAAAATTTAGGCGGCGCAAATAATTTTTGGATGGTGAATAGGATTACTTAATCGCGTTGTTTGATTCCTAGATTTCACCAAGTCTACGTCGCGACAAACCACAATGGAAGTTGCCGTATACAGACCGAGTAAACTACAATTTCGTCTTCTCTCTCTACATTTATATATGAAACTTGACACAGTCTCACACACAACGTGAGG...

XM_057951556.1
ACCACAATGGAAGTTGCCGTATACAGACCGAGTAAACTACAATTTCGTCTTCTCTCTCTACATTTATATATGAAACTTGACACAGTCTCACACACAACGTGAGGTTGTTTTTCTCGATCATTATAGCTGTCACAGGCCTGGGGGAGGAGTATTATCGGAATATGGACGAGCGGCCACCGGAGCTCGGCGGAGAGTGGAAGAGGGTGGTGGTTGTCGGCGGCGGCGTCGCAGGAAGGAGTATTTTGAGATTCCGTGGGCAA...

CDS

2 records

下载 CDS FASTA

LOC131022133
ATGGACGAGCGGCCACCGGAGCTCGGCGGAGAGTGGAAGAGGGTGGTGGTTGTCGGCGGCGGCGTCGCAGGTTCGCTCATCTCCAAAACTCTTCAATTCCATGGCGATGTCACCCTCATCGACCCGAAGGAGTATTTTGAGATTCCGTGGGCAAGCATGAGGTCAAAGGTGGAGCCGACTTTTGCAGAGAGATCCGTGATTTACCACAAGGATTACCTCACCAACGGGCGTCTCGTAGTTGGCAAGGCTATAAGCATCTC...

LOC131022133
ATGAGGTCAAAGGTGGAGCCGACTTTTGCAGAGAGATCCGTGATTTACCACAAGGATTACCTCACCAACGGGCGTCTCGTAGTTGGCAAGGCTATAAGCATCTCCAACTCTCAAGTATTGACCTCAGACGGCCATCAGATTCCCTATGACTACCTCGTCATTGCCACTGGCCACAACGACTCCTTCCCTGAAACTAGATATGAGAGGCTTCAAGAATTCCGATCAGAGCACGAAGAGATAAGATCTTCCGACTCTATACT...

Protein

2 records

下载 Protein FASTA

XP_057807531.1
MDERPPELGGEWKRVVVVGGGVAGSLISKTLQFHGDVTLIDPKEYFEIPWASMRSKVEPTFAERSVIYHKDYLTNGRLVVGKAISISNSQVLTSDGHQIPYDYLVIATGHNDSFPETRYERLQEFRSEHEEIRSSDSILIVGGGPVGVELAAEIAVDFPEKKVTLVHDGSRLLEFMGPKAADKALGWLKSRRVEVKLQQSVDLNNFSEESKIFVTSSGEKIRADRLFVCTGKPPGSAWLRETMLKDSIDRFGRIKVDENL...

XP_057807539.1
MRSKVEPTFAERSVIYHKDYLTNGRLVVGKAISISNSQVLTSDGHQIPYDYLVIATGHNDSFPETRYERLQEFRSEHEEIRSSDSILIVGGGPVGVELAAEIAVDFPEKKVTLVHDGSRLLEFMGPKAADKALGWLKSRRVEVKLQQSVDLNNFSEESKIFVTSSGEKIRADRLFVCTGKPPGSAWLRETMLKDSIDRFGRIKVDENLRVKGFKNVFAVGDITDFKEIKQGYFAQQHAVIAAKNLKVLMGGGQERKMAMY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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