当前解析结果
SmilChr01G001976| 统一新 Gene ID | SmilChr01G001976 |
|---|---|
| 名称 | SmilChr01G001976 |
| 描述 | uncharacterized SmilChr01G001976 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 35163307 - 35167469 / - |
| NCBI Gene ID | LOC131007072 |
|---|---|
| GeneID | 131007072 |
| locus_tag | - |
| NCBI Name | LOC131007072 |
| 原始查询 | SmilChr01G001976 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=low |
| 产物 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G29880 (AT2G29880)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538] identity=46.7; qcov=0.35; evalue=2.51e-44; confidence=low |
| Rice | Os08g0106900- identity=47; qcov=0.378; evalue=1.16e-41; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF12776 (Myb_DNA-bind_3); PF13359 (DDE_Tnp_4); PF26138 (DUF8040) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007072 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790201.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057790201.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057790201.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057790201.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057790201.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:35163325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B91,C31,C49,C5,D4 |
Chr1:35163472 |
G |
A |
EMS_canonical_SNV | stop_gained | 33 | A10,A8,B101,B105,B122,B123,B131,B132,B135,B140,B15,B3,B41,B47,B57,B62,B64,B66,B7,B87,C18,C24,C30,C4,C42,C43,C46,C47,C48,C52,C73,C74,D1 |
Chr1:35163477 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B77,D7 |
Chr1:35163477 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B77,D7 |
Chr1:35163493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C26 |
Chr1:35163498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C1,C4,C47,C51 |
Chr1:35163505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B77,B9,C11,C26 |
Chr1:35163542 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A14,B121,D11 |
Chr1:35163542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B121,D11 |
Chr1:35163569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B121,B17,B32 |
Chr1:35163581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr1:35163613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790201.1PF12776
Myb_DNA-bind_3 18-114 aa
PF26138
DUF8040 240-297 aa
PF13359
DDE_Tnp_4 333-389 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790201.1 |
Pfam | PF12776 |
Myb_DNA-bind_3 | Domain | 18 | 114 | 1.3e-18 | 68.5 | Myb/SANT-like DNA-binding domain |
XP_057790201.1 |
Pfam | PF26138 |
DUF8040 | Domain | 240 | 297 | 8e-11 | 42.4 | Domain of unknown function (DUF8040) |
XP_057790201.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 333 | 389 | 7.5e-08 | 32.9 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。