当前解析结果
SmilChr01G001989| 统一新 Gene ID | SmilChr01G001989 |
|---|---|
| 名称 | SmilChr01G001989 |
| 描述 | uncharacterized SmilChr01G001989 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 35312795 - 35318288 / - |
| NCBI Gene ID | LOC131007083 |
|---|---|
| GeneID | 131007083 |
| locus_tag | - |
| NCBI Name | LOC131007083 |
| 原始查询 | SmilChr01G001989 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0539700; species=rice; confidence=low |
| 产物 | hit=Os12g0539700; species=rice; confidence=low |
| Arabidopsis | AT3G51690 (AT3G51690)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332] identity=36.6; qcov=0.254; evalue=1.6e-52; confidence=weak |
| Rice | Os12g0539700- identity=42.3; qcov=0.35; evalue=1.09e-112; confidence=low |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF14214 (Helitron_like_N); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007083 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790213.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057790213.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057790213.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790213.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790213.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:35312860 |
A |
AT |
1bp_insertion | frameshift_variant | 32 | A10,A25,A4,B106,B126,B19,B2,B24,B26,B29,B32,B34,B47,B54,B62,B66,B71,B72,B73,B87,C26,C31,C38,C43,C5,C58,C62,C74,C76,C78,C85,D3 |
Chr1:35312912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C55,C72 |
Chr1:35312914 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | C72 |
Chr1:35312914 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | C72 |
Chr1:35312918 |
G |
GAA |
2bp_insertion | frameshift_variant | 1 | C72 |
Chr1:35312918 |
G |
GAA |
2bp_insertion | CDS_variant | 1 | C72 |
Chr1:35312920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr1:35312925 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B37,C82 |
Chr1:35312925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C82 |
Chr1:35312964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,C5,C53,C56 |
Chr1:35313006 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A10,B34,B66 |
Chr1:35313006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B34,B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790213.1PF14214
Helitron_like_N 275-457 aa
PF05970
PIF1 857-1074 aa
PF21530
Pif1_2B_dom 1128-1174 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790213.1 |
Pfam | PF14214 |
Helitron_like_N | Domain | 275 | 457 | 2.8e-64 | 217.6 | Helitron helicase-like domain at N-terminus |
XP_057790213.1 |
Pfam | PF05970 |
PIF1 | Family | 857 | 1074 | 1.2e-91 | 307.0 | PIF1-like helicase |
XP_057790213.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 1128 | 1174 | 1.4e-23 | 83.0 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。