当前解析结果
SmilChr01G002000| 统一新 Gene ID | SmilChr01G002000 |
|---|---|
| 名称 | SmilChr01G002000 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 35509874 - 35512498 / - |
| NCBI Gene ID | LOC131007094 |
|---|---|
| GeneID | 131007094 |
| locus_tag | - |
| NCBI Name | LOC131007094 |
| 原始查询 | SmilChr01G002000 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=27.6; qcov=0.849; evalue=2.84e-59; confidence=low |
| Rice | Os11g0681300- identity=30; qcov=0.781; evalue=1.14e-59; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007094 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790235.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057790235.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057790235.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790235.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:35510620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B88,C37 |
Chr1:35510886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:35511292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,C1,C24,C25,C39 |
Chr1:35511307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,C1,C24,C25,C39 |
Chr1:35511325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,C1,C24,C25,C39 |
Chr1:35511346 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B126,B130,B140,B47,B51,B58,C51 |
Chr1:35511349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B6,C12,C40,C74,C78 |
Chr1:35511361 |
AAG |
A |
2bp_deletion | frameshift_variant | 5 | B6,C12,C40,C74,C78 |
Chr1:35511361 |
AAG |
A |
2bp_deletion | CDS_variant | 5 | B6,C12,C40,C74,C78 |
Chr1:35511382 |
AG |
A |
1bp_deletion | frameshift_variant | 7 | A7,B6,B63,B83,C40,C74,C78 |
Chr1:35511384 |
TAG |
T |
2bp_deletion | frameshift_variant | 13 | A5,A7,B6,B63,B83,C1,C24,C25,C39,C40,C66,C74,C78 |
Chr1:35511395 |
TCC |
T |
2bp_deletion | frameshift_variant | 2 | C39,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790235.1PF21056
ZSWIM1-3_RNaseH-like 96-205 aa
PF10551
MULE 124-215 aa
PF04434
SWIM 372-391 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790235.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 96 | 205 | 1.8e-11 | 44.8 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057790235.1 |
Pfam | PF10551 |
MULE | Domain | 124 | 215 | 1.1e-27 | 96.9 | MULE transposase domain |
XP_057790235.1 |
Pfam | PF04434 |
SWIM | Domain | 372 | 391 | 0.00017 | 21.8 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。