当前解析结果
SmilChr01G002014| 统一新 Gene ID | SmilChr01G002014 |
|---|---|
| 名称 | SmilChr01G002014 |
| 描述 | uncharacterized SmilChr01G002014 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 35689427 - 35690865 / - |
| NCBI Gene ID | LOC131007151 |
|---|---|
| GeneID | 131007151 |
| locus_tag | - |
| NCBI Name | LOC131007151 |
| 原始查询 | SmilChr01G002014 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=26.2; qcov=0.984; evalue=2.84e-22; confidence=low |
| Rice | gene-orf258 (orf258)- identity=30.2; qcov=0.343; evalue=1.35e-13; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007151 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057790295.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057790295.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057790295.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790295.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790295.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:35689444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:35689445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr1:35689447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:35689474 |
G |
GA |
1bp_insertion | frameshift_variant | 33 | A15,A19,A23,A7,B11,B132,B139,B140,B22,B31,B32,B41,B44,B49,B57,B64,B69,B71,B90,B99,C2,C21,C25,C36,C5,C59,C62,C63,C74,C80,C83,D3,D9 |
Chr1:35689484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:35689487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:35689497 |
CGT |
C |
2bp_deletion | frameshift_variant | 6 | A15,B22,B31,C25,C36,C5 |
Chr1:35689523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr1:35689553 |
CAG |
C |
2bp_deletion | frameshift_variant | 2 | C61,C85 |
Chr1:35689553 |
CAG |
C |
2bp_deletion | CDS_variant | 2 | C61,C85 |
Chr1:35689557 |
A |
ACT |
2bp_insertion | frameshift_variant | 3 | B35,C61,C85 |
Chr1:35689557 |
A |
ACT |
2bp_insertion | CDS_variant | 3 | B35,C61,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790295.1PF13966
zf-RVT 155-242 aa
PF13456
RVT_3 331-417 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790295.1 |
Pfam | PF13966 |
zf-RVT | Domain | 155 | 242 | 1.6e-15 | 58.2 | zinc-binding in reverse transcriptase |
XP_057790295.1 |
Pfam | PF13456 |
RVT_3 | Domain | 331 | 417 | 1.2e-10 | 42.1 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。