当前解析结果
SmilChr01G002031| 统一新 Gene ID | SmilChr01G002031 |
|---|---|
| 名称 | SmilChr01G002031 |
| 描述 | serine/threonine-protein kinase OXI1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 35889237 - 35890863 / - |
| NCBI Gene ID | LOC131022902 |
|---|---|
| GeneID | 131022902 |
| locus_tag | - |
| NCBI Name | LOC131022902 |
| 原始查询 | SmilChr01G002031 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase OXI1-like |
| 产物 | serine/threonine-protein kinase OXI1-like |
| Arabidopsis | AT3G25250 (AGC2-1)AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822119] identity=56.3; qcov=1.04; evalue=3.71e-160; confidence=high |
| Rice | Os09g0486700- identity=38.4; qcov=0.979; evalue=2.52e-79; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022902 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808428.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808428.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057808428.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808428.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808428.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:35889600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:35889985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr1:35890316 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C48 |
Chr1:35890316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:35890323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,C48 |
Chr1:35890335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr1:35890337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:35890340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B35,B89,C63,C7,D10 |
Chr1:35890341 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C7 |
Chr1:35890341 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C7 |
Chr1:35890342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C48,C82 |
Chr1:35890348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B89,C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808428.1PF07714
PK_Tyr_Ser-Thr 22-184 aa
PF00069
Pkinase 23-187 aa
PF00069
Pkinase 241-340 aa
PF07714
PK_Tyr_Ser-Thr 243-335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808428.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 22 | 184 | 1.3e-21 | 77.8 | Protein tyrosine and serine/threonine kinase |
XP_057808428.1 |
Pfam | PF00069 |
Pkinase | Domain | 23 | 187 | 2.9e-54 | 184.9 | Protein kinase domain |
XP_057808428.1 |
Pfam | PF00069 |
Pkinase | Domain | 241 | 340 | 2.9e-54 | 184.9 | Protein kinase domain |
XP_057808428.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 243 | 335 | 1.3e-21 | 77.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。