当前解析结果
SmilChr01G002040| 统一新 Gene ID | SmilChr01G002040 |
|---|---|
| 名称 | SmilChr01G002040 |
| 描述 | probable xyloglucan glycosyltransferase 6 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 36071202 - 36076483 / + |
| NCBI Gene ID | LOC131022940 |
|---|---|
| GeneID | 131022940 |
| locus_tag | - |
| NCBI Name | LOC131022940 |
| 原始查询 | SmilChr01G002040 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable xyloglucan glycosyltransferase 6 |
| 产物 | probable xyloglucan glycosyltransferase 6 |
| Arabidopsis | AT3G07330 (CSLC6)Cellulose-synthase-like C6 [Source:NCBI gene (formerly Entrezgene);Acc:819921] identity=74.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0510800 (OsCslC7)- identity=65.6; qcov=0.958; evalue=0; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0016757 (glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00535 (Glycos_transf_2); PF13506 (Glyco_transf_21); PF13632 (Glyco_trans_2_3); PF13641 (Glyco_tranf_2_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022940 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057808467.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057808467.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057808467.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057808467.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808467.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:36071407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,B27 |
Chr1:36071474 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B58 |
Chr1:36071474 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B58 |
Chr1:36071477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr1:36071635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B49,B64,B75,D9 |
Chr1:36071664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,C85 |
Chr1:36071744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B47,D7 |
Chr1:36073992 |
T |
TG |
1bp_insertion | frameshift_variant | 20 | A10,A24,B122,B13,B48,B56,B61,B68,B80,B96,C10,C16,C21,C22,C38,C42,C56,C73,C81,D5 |
Chr1:36073995 |
GC |
G |
1bp_deletion | frameshift_variant | 20 | A10,A24,B122,B13,B48,B56,B61,B68,B80,B96,C10,C16,C21,C22,C38,C42,C56,C73,C81,D5 |
Chr1:36075615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:36075629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B55,B91,C57 |
Chr1:36075924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808467.1PF13506
Glyco_transf_21 223-508 aa
PF13641
Glyco_tranf_2_3 225-458 aa
PF00535
Glycos_transf_2 230-376 aa
PF13632
Glyco_trans_2_3 319-513 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808467.1 |
Pfam | PF13506 |
Glyco_transf_21 | Domain | 223 | 508 | 8.8e-13 | 48.5 | Glycosyl transferase family 21 |
XP_057808467.1 |
Pfam | PF13641 |
Glyco_tranf_2_3 | Domain | 225 | 458 | 4.3e-14 | 53.5 | Glycosyltransferase like family 2 |
XP_057808467.1 |
Pfam | PF00535 |
Glycos_transf_2 | Domain | 230 | 376 | 1.2e-08 | 35.8 | Glycosyl transferase family 2 |
XP_057808467.1 |
Pfam | PF13632 |
Glyco_trans_2_3 | Domain | 319 | 513 | 1.2e-17 | 65.1 | Glycosyl transferase family group 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。