当前解析结果
SmilChr01G002045| 统一新 Gene ID | SmilChr01G002045 |
|---|---|
| 名称 | SmilChr01G002045 |
| 描述 | serine/threonine-protein kinase OXI1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 36195309 - 36197167 / + |
| NCBI Gene ID | LOC131022974 |
|---|---|
| GeneID | 131022974 |
| locus_tag | - |
| NCBI Name | LOC131022974 |
| 原始查询 | SmilChr01G002045 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase OXI1-like |
| 产物 | serine/threonine-protein kinase OXI1-like |
| Arabidopsis | AT3G25250 (AGC2-1)AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822119] identity=56; qcov=1.04; evalue=1.77e-160; confidence=high |
| Rice | Os09g0486700- identity=38.4; qcov=0.979; evalue=1.95e-79; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022974 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808497.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808497.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057808497.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808497.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808497.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:36195699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:36195710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B117,B126,C53,C67 |
Chr1:36195737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr1:36195748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,C53,C67 |
Chr1:36195802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,C53,C67 |
Chr1:36195815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B68,B81,B87,C54,C58 |
Chr1:36195818 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A6,B120,C61 |
Chr1:36195818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B120,C61 |
Chr1:36195819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A25 |
Chr1:36195825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,C67 |
Chr1:36195826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,B87 |
Chr1:36195877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B72,C12,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808497.1PF07714
PK_Tyr_Ser-Thr 22-195 aa
PF00069
Pkinase 23-188 aa
PF00069
Pkinase 241-340 aa
PF07714
PK_Tyr_Ser-Thr 243-335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808497.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 22 | 195 | 6.8e-22 | 78.7 | Protein tyrosine and serine/threonine kinase |
XP_057808497.1 |
Pfam | PF00069 |
Pkinase | Domain | 23 | 188 | 2.3e-54 | 185.3 | Protein kinase domain |
XP_057808497.1 |
Pfam | PF00069 |
Pkinase | Domain | 241 | 340 | 2.3e-54 | 185.3 | Protein kinase domain |
XP_057808497.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 243 | 335 | 6.8e-22 | 78.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。