当前解析结果
SmilChr01G002062| 统一新 Gene ID | SmilChr01G002062 |
|---|---|
| 名称 | SmilChr01G002062 |
| 描述 | uncharacterized SmilChr01G002062 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 36456791 - 36460998 / + |
| NCBI Gene ID | LOC131023090 |
|---|---|
| GeneID | 131023090 |
| locus_tag | - |
| NCBI Name | LOC131023090 |
| 原始查询 | SmilChr01G002062 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832220]; symbol=AT5G20950; hit=AT5G20950; species=arabidopsis; confidence=high |
| 产物 | Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832220]; symbol=AT5G20950; hit=AT5G20950; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G20950 (AT5G20950)Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832220] identity=77.2; qcov=0.995; evalue=0; confidence=high |
| Rice | Os03g0749300 (OsBGLU1)- identity=73.1; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0008422 (beta-glucosidase activity); GO:0009251 (glucan catabolic process) |
| KEGG | smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023090 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057808629.1 |
| 2 | Lysosome | 溶酶体 | 0.40000 | XP_057808618.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808629.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808629.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808629.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:36457338 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B76 |
Chr1:36457338 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B76 |
Chr1:36458418 |
GCC |
G |
2bp_deletion | frameshift_variant | 1 | C82 |
Chr1:36458418 |
GCC |
G |
2bp_deletion | CDS_variant | 1 | C82 |
Chr1:36459312 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B22,C30 |
Chr1:36459312 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B22,C30 |
Chr1:36459471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr1:36459696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr1:36459939 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B139,B17,B62,C30,D1 |
Chr1:36460090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,D5 |
Chr1:36460144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr1:36460291 |
TCA |
T |
2bp_deletion | frameshift_variant | 109 | A1,A16,A2,A20,A3,A4,A5,A7,B100,B101,B104,B105,B107,B108,B11,B114,B115,B12,B123,B128,B130,B131,B133,B134,B137,B139,B14,B140,B18,B19,B20,B22,B26,B27,B28,B29,B30,B32,B33,B34,B35,B41,B44,B47,B48,B5,B50,B51,B54,B55,B59,B62,B64,B65,B69,B76,B78,B80,B82,B85,B86,B87,B91,B92,B94,B96,B97,B99,C11,C12,C15,C18,C21,C22,C27,C28,C30,C32,C36,C39,C41,C46,C47,C48,C49,C50,C52,C53,C59,C60,C66,C68,C69,C7,C71,C77,C8,C81,C83,C85,C87,D1,D10,D2,D3,D4,D5,D6,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808618.1PF00933
Glyco_hydro_3 82-410 aa
PF01915
Glyco_hydro_3_C 447-683 aa
XP_057808624.1PF00933
Glyco_hydro_3 82-410 aa
PF01915
Glyco_hydro_3_C 447-656 aa
XP_057808629.1PF00933
Glyco_hydro_3 46-374 aa
PF01915
Glyco_hydro_3_C 411-620 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808618.1 |
Pfam | PF00933 |
Glyco_hydro_3 | Domain | 82 | 410 | 4.2e-69 | 234.1 | Glycosyl hydrolase family 3 N terminal domain |
XP_057808618.1 |
Pfam | PF01915 |
Glyco_hydro_3_C | Domain | 447 | 683 | 1.4e-35 | 123.8 | Glycosyl hydrolase family 3 C-terminal domain |
XP_057808624.1 |
Pfam | PF00933 |
Glyco_hydro_3 | Domain | 82 | 410 | 4e-69 | 234.2 | Glycosyl hydrolase family 3 N terminal domain |
XP_057808624.1 |
Pfam | PF01915 |
Glyco_hydro_3_C | Domain | 447 | 656 | 4.6e-37 | 128.6 | Glycosyl hydrolase family 3 C-terminal domain |
XP_057808629.1 |
Pfam | PF00933 |
Glyco_hydro_3 | Domain | 46 | 374 | 3.5e-69 | 234.4 | Glycosyl hydrolase family 3 N terminal domain |
XP_057808629.1 |
Pfam | PF01915 |
Glyco_hydro_3_C | Domain | 411 | 620 | 4.3e-37 | 128.7 | Glycosyl hydrolase family 3 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。