Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002084

染色体: Chr01 坐标: 36778082-36782124 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002084
名称SmilChr01G002084
描述uncharacterized SmilChr01G002084
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向36778082 - 36782124 / -

ID 对照

NCBI Gene IDLOC131023241
GeneID131023241
locus_tag-
NCBI NameLOC131023241
原始查询SmilChr01G002084

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述myb-like protein X [Source:NCBI gene (formerly Entrezgene);Acc:834369]; symbol=AT5G43490; hit=AT5G43490; species=arabidopsis; confidence=weak
产物myb-like protein X [Source:NCBI gene (formerly Entrezgene);Acc:834369]; symbol=AT5G43490; hit=AT5G43490; species=arabidopsis; confidence=weak
ArabidopsisAT5G43490 (AT5G43490)
myb-like protein X [Source:NCBI gene (formerly Entrezgene);Acc:834369]
identity=41.9; qcov=0.215; evalue=3.27e-19; confidence=weak
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131023241

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057808766.1
2 Chromosome 染色体 0.00000 XP_057808766.1
3 Centromere 着丝粒 0.00000 XP_057808766.1
4 Chromatin 染色质 0.00000 XP_057808766.1
5 Telomere 端粒 0.00000 XP_057808766.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:36778600 G A EMS_canonical_SNV CDS_variant 1 B127
Chr1:36778718 C T EMS_canonical_SNV CDS_variant 3 A21,B69,C87
Chr1:36778815 G A EMS_canonical_SNV CDS_variant 1 B138
Chr1:36778929 G A EMS_canonical_SNV CDS_variant 2 B62,D10
Chr1:36779021 C T EMS_canonical_SNV CDS_variant 1 B140
Chr1:36779106 G A EMS_canonical_SNV CDS_variant 4 A11,B138,B2,D11
Chr1:36779731 G A EMS_canonical_SNV CDS_variant 2 B104,C52
Chr1:36779881 G A EMS_canonical_SNV CDS_variant 2 B33,B99
Chr1:36779992 G A EMS_canonical_SNV CDS_variant 3 A11,B138,B2
Chr1:36780152 C T EMS_canonical_SNV CDS_variant 1 A11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA
XM_057952807.1
CCATCCGCTATAAATACAACCTCCCTCATTAACATCTTTCTTCTTCCTTTGGGGTTTCCTCAGAGGCGGCCCCTTCTCAGAAAAAAAAGAAGAAAAAAGTTTGAAAATTGAAAATTCCTCGCAGGATCTGAGGATCACGAACTGAACACACTTAGTAGCAGAAACCACAAATTGATTATGCTTATTTGTTTATACACACGAACAATTTCTCAGAGAACGATAGGTGTCAGATGCATTTATGGTATGGTATAGTTGGTTGA...
XM_057952783.1
CCATCCGCTATAAATACAACCTCCCTCATTAACATCTTTCTTCTTCCTTTGGGGTTTCCTCAGAGGCGGCCCCTTCTCAGAAAAAAAAGAAGAAAAAAGTTTGAAAATTGAAAATTCCTCGCAGGATCTGAGGATCACGAACTGAACACACTTAGTAGCAGAAACCACAAATTGATTATGCTTATTTGTTTATACACACGAACAATTTCTCAGAGAACGATAGGTGTCAGATGCATTTATGGTATGGTATAGTTGGTTGA...

CDS

10 records

下载 CDS FASTA
LOC131023241
ATGTCTCGCTGTTTTCCCTTCCCCCCGCCTGGATATGAGTTGAAGGGTACACCCGATGATGTGAATTTGATCATAAAGGAGAAACAAAAGCACAAGAAGCACAAGGATAAGAAGGAGAAGAAGGAGAAGAAAGAAAAAAGTGAAAGAAAGGATAAGGAGAGAGGTGAAGATAAACACAAAGACAAGAAGGATAAGAAACGAAAGCGTGAGAAACATAGAGACAAGAAGGATAAAAATAAAGATAAACCAAGTTCTTCTGC...
LOC131023241
ATGTCTCGCTGTTTTCCCTTCCCCCCGCCTGGATATGAGTTGAAGGGTACACCCGATGATGTGAATTTGATCATAAAGGAGAAACAAAAGCACAAGAAGCACAAGGATAAGAAGGAGAAGAAGGAGAAGAAAGAAAAAAGTGAAAGAAAGGATAAGGAGAGAGGTGAAGATAAACACAAAGACAAGAAGGATAAGAAACGAAAGCGTGAGAAACATAGAGACAAGAAGGATAAAAATAAAGATAAACCAAGTTCTTCTGC...

Protein

10 records

下载 Protein FASTA
XP_057808766.1
MSRCFPFPPPGYELKGTPDDVNLIIKQEKQKHKKHKDKKEKKEKKEKSERKDKERGEDKHKDKKDKKRKREKHRDKKDKNKDKPSSSAERKLVGPLENQNDQKLVPDSKPTIRIQDERSVVELGNRVKNDGAKGTQMVQKITILEKEKANLLGKVQENGNGRLAIKDPRDHSRTANGQSLQVDMRSLGNGRNSYGENQIKVEEGKERTGYGNMVAGGGDASRKADQNKNTKAEDKKGKKEKKRELTGFRKDEVKQETSNS...
XP_057808770.1
MSRCFPFPPPGYELKGTPDDVNLIIKQEKQKHKKHKDKKEKKEKKEKSERKDKERGEDKHKDKKDKKRKREKHRDKKDKNKDKPSSSAERKLVGPLENQNDQKLVPDSKPTIRIQDERSVVELGNRVKNDGAKGTQMVQKITILEKEKANLLGKVQENGNGRLAIKDPRDHSRTANGQSLQVDMRSLGNGRNSYGENQIKVEEGKERTGYGNMVAGGGDASRKADQNKNTKAEDKKGKKEKKRELTGFRKDEVKQETSNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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