Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002108`

染色体: Chr01 坐标: 37141366-37143950 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002108`
名称	SmilChr01G002108
描述	uncharacterized SmilChr01G002108
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	37141366 - 37143950 / `-`

ID 对照

NCBI Gene ID	`LOC131023453`
GeneID	`131023453`
locus_tag	`-`
NCBI Name	`LOC131023453`
原始查询	`SmilChr01G002108`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834923]; symbol=AT5G48655; hit=AT5G48655; species=arabidopsis; confidence=medium
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834923]; symbol=AT5G48655; hit=AT5G48655; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G48655` (AT5G48655) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834923] identity=46.3; qcov=0.962; evalue=1.03e-45; confidence=medium
Rice	`Os01g0919500` - identity=39; qcov=0.793; evalue=3.29e-29; confidence=medium
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131023453

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808978.1`
2	Chromosome	染色体	0.00000	`XP_057808978.1`
3	Centromere	着丝粒	0.00000	`XP_057808978.1`
4	Chromatin	染色质	0.00000	`XP_057808978.1`
5	Telomere	端粒	0.00000	`XP_057808978.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:37142130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr1:37142142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:37142143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B95,C14,C34,C74
`Chr1:37142683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:37142717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808978.1

213 aa

106

213

zf-RING_2

zf-C3HC4_3

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

PF13639 zf-RING_2 155-194 aa PF13920 zf-C3HC4_3 155-198 aa PF13445 zf-RING_UBOX 156-191 aa PF00097 zf-C3HC4 156-193 aa PF13923 zf-C3HC4_2 156-193 aa

XP_057808981.1

213 aa

106

213

zf-RING_2

zf-C3HC4_3

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

PF13639 zf-RING_2 155-194 aa PF13920 zf-C3HC4_3 155-198 aa PF13445 zf-RING_UBOX 156-191 aa PF00097 zf-C3HC4 156-193 aa PF13923 zf-C3HC4_2 156-193 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808978.1`	Pfam	`PF13639`	zf-RING_2	Domain	155	194	7.3e-09	36.5	Ring finger domain
`XP_057808978.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	155	198	9.3e-07	29.3	Zinc finger, C3HC4 type (RING finger)
`XP_057808978.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	156	191	7.5e-07	29.8	RING-type zinc-finger
`XP_057808978.1`	Pfam	`PF00097`	zf-C3HC4	Domain	156	193	4.4e-09	36.8	Zinc finger, C3HC4 type (RING finger)
`XP_057808978.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	156	193	3.3e-10	40.3	Zinc finger, C3HC4 type (RING finger)
`XP_057808981.1`	Pfam	`PF13639`	zf-RING_2	Domain	155	194	7.3e-09	36.5	Ring finger domain
`XP_057808981.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	155	198	9.3e-07	29.3	Zinc finger, C3HC4 type (RING finger)
`XP_057808981.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	156	191	7.5e-07	29.8	RING-type zinc-finger
`XP_057808981.1`	Pfam	`PF00097`	zf-C3HC4	Domain	156	193	4.4e-09	36.8	Zinc finger, C3HC4 type (RING finger)
`XP_057808981.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	156	193	3.3e-10	40.3	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057952998.1
ACAGCGGCGCCCAAATTTCGTAAGTGGTGACGTGTTAATGAGTCTTGAAACGTGGCCATTTCCCTCACTCTCTCCAAATCGTGTGAAAATGTCTGTATTCACATAACTCTATTCCCAATCCCTAATTTATTTAACAAATCGAAAACCTCCTCCCTCGCCTTCTTCTCCCCCAATTCAAATCTTCAAGTTGATAAACTATACTATCTAGAAAGTTATATAGATACAAAGCTTTCTTTAGTTTCACCGATTCGTAAATTGAA...

XM_057952995.1
CATTTCCCTCACTCTCTCCAAATCGTGTGAAAATGTCTGTATTCACATAACTCTATTCCCAATCCCTAATTTATTTAACAAATCGAAAACCTCCTCCCTCGCCTTCTTCTCCCCCAATTCAAATCTTCAAGTTGATAAACTATACTATCTAGAAAGTTATATAGATACAAAGCTTTCTTTAGTTTCACCGATTCGTAAATTGAAGAAATCAGGAGATTGGAGGTCTTGCCATTGCTGCATCATGAGCAATCAACAGGAAA...

CDS

2 records

下载 CDS FASTA

LOC131023453
ATGAGCAATCAACAGGAAATTAGGATGTATACAAGGGCTAGAAGTAGGAGGCGAATGCTAGATGTTGATCTTAATGCTGCACCGCCATGTGAAATCCGGGAACATGGTGTCGTTTCACACCATACTAGGTCGCAGGACAGGCAAGATGCTGTAATAATTGGTACCTTGCCTCCACCAATTGATGTAGAGGCGCTTGATGATGATGTTATTATCTCTTCGCCTACAGCATTTGCAGAAGCTAAGAACAATTCCAGAAGGAA...

Protein

2 records

下载 Protein FASTA

XP_057808978.1
MSNQQEIRMYTRARSRRRMLDVDLNAAPPCEIREHGVVSHHTRSQDRQDAVIIGTLPPPIDVEALDDDVIISSPTAFAEAKNNSRRNRGRAIIVDVDNDERASRNKRRRVPTNQTIINCDLYINLESSSNSMRKSGQTAAVPPKPPVPPKEPTFSCPVCMGPLVEEMSTKCGHIFCKACIKASIAAQGKCPTCRRKTTAKDIIRVYLPSTRSA

XP_057808981.1
MSNQQEIRMYTRARSRRRMLDVDLNAAPPCEIREHGVVSHHTRSQDRQDAVIIGTLPPPIDVEALDDDVIISSPTAFAEAKNNSRRNRGRAIIVDVDNDERASRNKRRRVPTNQTIINCDLYINLESSSNSMRKSGQTAAVPPKPPVPPKEPTFSCPVCMGPLVEEMSTKCGHIFCKACIKASIAAQGKCPTCRRKTTAKDIIRVYLPSTRSA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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