当前解析结果
SmilChr01G002109| 统一新 Gene ID | SmilChr01G002109 |
|---|---|
| 名称 | SmilChr01G002109 |
| 描述 | uncharacterized SmilChr01G002109 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37148586 - 37151434 / - |
| NCBI Gene ID | LOC131023463 |
|---|---|
| GeneID | 131023463 |
| locus_tag | - |
| NCBI Name | LOC131023463 |
| 原始查询 | SmilChr01G002109 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell division cycle 45 [Source:NCBI gene (formerly Entrezgene);Acc:822101]; symbol=CDC45; hit=AT3G25100; species=arabidopsis; confidence=high |
| 产物 | cell division cycle 45 [Source:NCBI gene (formerly Entrezgene);Acc:822101]; symbol=CDC45; hit=AT3G25100; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G25100 (CDC45)cell division cycle 45 [Source:NCBI gene (formerly Entrezgene);Acc:822101] identity=71; qcov=1; evalue=0; confidence=high |
| Rice | Os11g0128400 (OsCDC45)- identity=64; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0000727 (double-strand break repair via break-induced replication); GO:0003682 (chromatin binding); GO:0003688 (DNA replication origin binding); GO:0003697 (single-stranded DNA binding); GO:0006270 (DNA replication initiation); GO:0031261 (DNA replication preinitiation complex); GO:1902977 (mitotic DNA replication preinitiation complex assembly) |
| KEGG | - |
| Pfam | PF02724 (CDC45) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023463 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808989.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057808989.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057808989.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057808989.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057808989.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37148952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:37149033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:37149847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B45,C72,D9 |
Chr1:37149992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B50,B99,C40,D2 |
Chr1:37150173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B24,C13,C85 |
Chr1:37150174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,A14,B51,C33 |
Chr1:37150198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B50,B99,C40,D2 |
Chr1:37150220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr1:37150254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:37150444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,B8,C19 |
Chr1:37150603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:37150644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,A14,B51,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808989.1PF02724
CDC45 27-588 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808989.1 |
Pfam | PF02724 |
CDC45 | Family | 27 | 588 | 1.6e-156 | 523.0 | CDC45 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。