Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002109

染色体: Chr01 坐标: 37148586-37151434 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002109
名称SmilChr01G002109
描述uncharacterized SmilChr01G002109
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向37148586 - 37151434 / -

ID 对照

NCBI Gene IDLOC131023463
GeneID131023463
locus_tag-
NCBI NameLOC131023463
原始查询SmilChr01G002109

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cell division cycle 45 [Source:NCBI gene (formerly Entrezgene);Acc:822101]; symbol=CDC45; hit=AT3G25100; species=arabidopsis; confidence=high
产物cell division cycle 45 [Source:NCBI gene (formerly Entrezgene);Acc:822101]; symbol=CDC45; hit=AT3G25100; species=arabidopsis; confidence=high
ArabidopsisAT3G25100 (CDC45)
cell division cycle 45 [Source:NCBI gene (formerly Entrezgene);Acc:822101]
identity=71; qcov=1; evalue=0; confidence=high
RiceOs11g0128400 (OsCDC45)
-
identity=64; qcov=1.03; evalue=0; confidence=high
GOGO:0000727 (double-strand break repair via break-induced replication); GO:0003682 (chromatin binding); GO:0003688 (DNA replication origin binding); GO:0003697 (single-stranded DNA binding); GO:0006270 (DNA replication initiation); GO:0031261 (DNA replication preinitiation complex); GO:1902977 (mitotic DNA replication preinitiation complex assembly)
KEGG-
PfamPF02724 (CDC45)
InterPro-
eggNOG-
NRGeneID:131023463

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057808989.1
2 Chromosome 染色体 0.00000 XP_057808989.1
3 Centromere 着丝粒 0.00000 XP_057808989.1
4 Chromatin 染色质 0.00000 XP_057808989.1
5 Telomere 端粒 0.00000 XP_057808989.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:37148952 C T EMS_canonical_SNV CDS_variant 1 C82
Chr1:37149033 C T EMS_canonical_SNV CDS_variant 1 D10
Chr1:37149847 G A EMS_canonical_SNV CDS_variant 3 B45,C72,D9
Chr1:37149992 G A EMS_canonical_SNV CDS_variant 4 B50,B99,C40,D2
Chr1:37150173 C T EMS_canonical_SNV CDS_variant 4 B120,B24,C13,C85
Chr1:37150174 G A EMS_canonical_SNV CDS_variant 4 A13,A14,B51,C33
Chr1:37150198 C T EMS_canonical_SNV CDS_variant 5 B123,B50,B99,C40,D2
Chr1:37150220 C T EMS_canonical_SNV CDS_variant 1 C68
Chr1:37150254 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:37150444 G A EMS_canonical_SNV CDS_variant 3 B78,B8,C19
Chr1:37150603 G A EMS_canonical_SNV CDS_variant 1 C82
Chr1:37150644 G A EMS_canonical_SNV CDS_variant 4 A13,A14,B51,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057808989.1
590 aa
N
1
295
590
CDC45
C
PF02724 CDC45 27-588 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057808989.1 Pfam PF02724 CDC45 Family 27 588 1.6e-156 523.0 CDC45

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057953006.1
GCAAAGCCCAAATTTCGAGCCCACTATTTTGCATAATTATGTGAGTATCTGAGCTAGAGCGTATCAGATTCAAGGAAACAAAATCATGTTTTAAATCCAAGTTTCAGCGCCAATTTGTGGAGGCAAATCGAAATTTCAAAACATTTCCCATTTTCCAATCTCCAAAATCGAACTTAACAGCAGCCACACTCAAAAATCAAAACCAATTCAAACTTCAAACCACTTTCTCCTTCCCTCTCTCTTTGATTTTCAACGAGCAA...

CDS

1 records

下载 CDS FASTA
LOC131023463
ATGAGGGAGCTAAGTATTGAATCGTTTTACGCACGGCTAAGAGAGTCAGCGATAGCCTCAGCTTCATCTGCCCCTCTTCTAATTTTCCCTTCAACTTCGGATGTTGATTCACTATGTGCGTTGAAAATTATAGGGCATGTTCTTGAATCTGATTCGATTAGGTATGCCTGTTACCCAGTTTCGAGTTTCAAGGAAATCCACAAGTATGCAGGGCCTAACCTGAGTTCATCCTCGAATGAGCCCATAACCATTTTGTTGAT...

Protein

1 records

下载 Protein FASTA
XP_057808989.1
MRELSIESFYARLRESAIASASSAPLLIFPSTSDVDSLCALKIIGHVLESDSIRYACYPVSSFKEIHKYAGPNLSSSSNEPITILLINWGCHRDLRRDLQIGPLARVFVVDSHRPIHLHNLSDQNDCVVVLYTRDDENQADLVYDFDVSTVANASELNSDGEVEEDSESEDESDVEEGGEVGRKRRRDSENEGNPDKLFKKLKRDYYYMGTYHGKPSGCLMYELSHSLRKNKNELLWLACVALTDQFVHERLTEERYQAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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