Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002112`

染色体: Chr01 坐标: 37163586-37165971 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002112`
名称	SmilChr01G002112
描述	putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	37163586 - 37165971 / `-`

ID 对照

NCBI Gene ID	`LOC131023493`
GeneID	`131023493`
locus_tag	`-`
NCBI Name	`LOC131023493`
原始查询	`SmilChr01G002112`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At3g25060%2C mitochondrial
Arabidopsis	`AT3G25060` (AT3G25060) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822097] identity=48.7; qcov=0.844; evalue=0; confidence=high
Rice	`Os10g0540100` - identity=54.2; qcov=0.938; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131023493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057809020.1`
2	Nucleus	细胞核	0.00000	`XP_057809020.1`
3	Chromosome	染色体	0.00000	`XP_057809020.1`
4	Centromere	着丝粒	0.00000	`XP_057809020.1`
5	Chromatin	染色质	0.00000	`XP_057809020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:37163987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:37164075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:37164207`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:37164219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:37164426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B113,B25,C61
`Chr1:37164475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:37164582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:37164703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:37164724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B113,B25,C61
`Chr1:37164735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:37164778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:37164825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B50,B99,C40,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809020.1

706 aa

353

706

PPR

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

PPR_2

PPR

E_motif

DYW_deaminase

PF01535 PPR 69-94 aa PF01535 PPR 96-122 aa PF13041 PPR_2 96-140 aa PF01535 PPR 169-195 aa PF13041 PPR_2 194-242 aa PF01535 PPR 197-227 aa PF01535 PPR 271-298 aa PF13041 PPR_2 296-335 aa PF01535 PPR 299-329 aa PF01535 PPR 372-396 aa PF13041 PPR_2 398-445 aa PF01535 PPR 401-426 aa PF01535 PPR 435-463 aa PF01535 PPR 473-496 aa PF20431 E_motif 515-575 aa PF14432 DYW_deaminase 613-706 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	69	94	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	96	122	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF13041`	PPR_2	Repeat	96	140	2.9e-66	220.1	PPR repeat family
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	169	195	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF13041`	PPR_2	Repeat	194	242	2.9e-66	220.1	PPR repeat family
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	197	227	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	271	298	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF13041`	PPR_2	Repeat	296	335	2.9e-66	220.1	PPR repeat family
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	299	329	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	372	396	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF13041`	PPR_2	Repeat	398	445	2.9e-66	220.1	PPR repeat family
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	401	426	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	435	463	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF01535`	PPR	Repeat	473	496	6.8e-67	217.9	PPR repeat
`XP_057809020.1`	Pfam	`PF20431`	E_motif	Repeat	515	575	2.9e-16	60.2	E motif
`XP_057809020.1`	Pfam	`PF14432`	DYW_deaminase	Domain	613	706	1.5e-40	137.6	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953037.1
TTTAGCTTTTGTCCTTTTGATACGAGTTATGACTTATGATTATGAACATCGCTTATTTATGCTGCTGATTCACGCAATTTGCAAAACATTCTCTCCCCAGCATCAAATGCTTGTACAAAAATGGTTGCTAAAGGATCTAAAATCTCTTCTGTTGAACTGCAGAAACAGTGCATCCATCTCCAAACTCCACGCATTGATGATTACATCTGGGATATCCAACAAAGGAGCGCAGCTAATAGCATCATACGCTCGAACTGGCG...

CDS

1 records

下载 CDS FASTA

LOC131023493
ATGACTTATGATTATGAACATCGCTTATTTATGCTGCTGATTCACGCAATTTGCAAAACATTCTCTCCCCAGCATCAAATGCTTGTACAAAAATGGTTGCTAAAGGATCTAAAATCTCTTCTGTTGAACTGCAGAAACAGTGCATCCATCTCCAAACTCCACGCATTGATGATTACATCTGGGATATCCAACAAAGGAGCGCAGCTAATAGCATCATACGCTCGAACTGGCGACATCGACATGGCCTACAAACTGTTCGA...

Protein

1 records

下载 Protein FASTA

XP_057809020.1
MTYDYEHRLFMLLIHAICKTFSPQHQMLVQKWLLKDLKSLLLNCRNSASISKLHALMITSGISNKGAQLIASYARTGDIDMAYKLFDNMPKKGIDSWNALIIAYSRRETPAEAINLYRKMKNSAGVNPDSSTFTVAIKACTTLLDLKSGGEIWRDAVECGYGGDVFVGSSVLNLFVRCGRMDEAMSVFDGMRRKDVVSWSTMITGLVKSGRPGEAVDVYRRMREEGLEGDGVVMLALMQACASVEDAKMAASVHGFIIRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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