当前解析结果
SmilChr01G002118| 统一新 Gene ID | SmilChr01G002118 |
|---|---|
| 名称 | SmilChr01G002118 |
| 描述 | uncharacterized SmilChr01G002118 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37201447 - 37203245 / - |
| NCBI Gene ID | LOC131023541 |
|---|---|
| GeneID | 131023541 |
| locus_tag | - |
| NCBI Name | LOC131023541 |
| 原始查询 | SmilChr01G002118 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826924]; symbol=AT4G13100; hit=AT4G13100; species=arabidopsis; confidence=medium |
| 产物 | RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826924]; symbol=AT4G13100; hit=AT4G13100; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G13100 (AT4G13100)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826924] identity=40.4; qcov=0.778; evalue=5.32e-43; confidence=medium |
| Rice | Os01g0917900- identity=93.9; qcov=0.156; evalue=3.89e-29; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF13920 (zf-C3HC4_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023541 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057809071.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057809071.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057809071.1 |
| 4 | Cell membrane | 细胞膜 | 0.40000 | XP_057809071.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057809071.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37201793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,D1 |
Chr1:37201888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:37201910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C51,D10 |
Chr1:37201931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr1:37201932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B139,D11 |
Chr1:37202054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B50,B99,C40,D2 |
Chr1:37202128 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B53,B64,B83,C50,C75 |
Chr1:37202139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C39 |
Chr1:37202156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B11,B114,C35,C47 |
Chr1:37202158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B35,B76,D11 |
Chr1:37202160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr1:37202198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,B27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809071.1PF13920
zf-C3HC4_3 265-308 aa
PF00097
zf-C3HC4 267-304 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809071.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 265 | 308 | 4.3e-10 | 39.9 | Zinc finger, C3HC4 type (RING finger) |
XP_057809071.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 267 | 304 | 4.9e-05 | 23.8 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。