当前解析结果
SmilChr01G002127| 统一新 Gene ID | SmilChr01G002127 |
|---|---|
| 名称 | SmilChr01G002127 |
| 描述 | pentatricopeptide repeat-containing protein At5g48730, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37279291 - 37283213 / + |
| NCBI Gene ID | LOC131023595 |
|---|---|
| GeneID | 131023595 |
| locus_tag | - |
| NCBI Name | LOC131023595 |
| 原始查询 | SmilChr01G002127 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g48730, chloroplastic |
| 产物 | pentatricopeptide repeat-containing protein At5g48730%2C chloroplastic |
| Arabidopsis | AT5G48730 (AT5G48730)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834931] identity=64.5; qcov=1.02; evalue=0; confidence=high |
| Rice | Os06g0172000- identity=70; qcov=0.874; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023595 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057809124.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057809124.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057809124.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057809124.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057809124.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37279411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C1,C17,C31,C4,C49 |
Chr1:37279633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,B53 |
Chr1:37279689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr1:37281489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:37281549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C83 |
Chr1:37281590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr1:37281617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B104,C39 |
Chr1:37281783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:37281841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C1,C17,C31,C4,C49 |
Chr1:37282261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C1,C17,C31 |
Chr1:37282282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr1:37282430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809124.1PF01535
PPR 142-170 aa
PF17177
PPR_long 157-260 aa
PF13812
PPR_3 161-221 aa
PF01535
PPR 176-202 aa
PF13041
PPR_2 176-221 aa
PF13812
PPR_3 205-257 aa
PF01535
PPR 212-241 aa
PF12854
PPR_1 240-271 aa
PF13041
PPR_2 243-291 aa
PF01535
PPR 246-273 aa
PF13812
PPR_3 269-328 aa
PF13041
PPR_2 279-327 aa
PF13812
PPR_3 306-362 aa
PF01535
PPR 318-344 aa
PF23276
TPR_24 337-431 aa
PF13041
PPR_2 351-396 aa
PF01535
PPR 352-381 aa
PF13812
PPR_3 373-432 aa
PF23276
TPR_24 405-467 aa
PF13041
PPR_2 420-466 aa
PF01535
PPR 422-452 aa
PF01535
PPR 457-484 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 142 | 170 | 5.7e-51 | 168.0 | PPR repeat |
XP_057809124.1 |
Pfam | PF17177 |
PPR_long | Repeat | 157 | 260 | 9e-16 | 58.6 | Pentacotripeptide-repeat region of PRORP |
XP_057809124.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 161 | 221 | 1.2e-43 | 147.7 | Pentatricopeptide repeat domain |
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 176 | 202 | 5.7e-51 | 168.0 | PPR repeat |
XP_057809124.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 176 | 221 | 6.8e-58 | 193.3 | PPR repeat family |
XP_057809124.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 205 | 257 | 1.2e-43 | 147.7 | Pentatricopeptide repeat domain |
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 212 | 241 | 5.7e-51 | 168.0 | PPR repeat |
XP_057809124.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 240 | 271 | 9.8e-38 | 128.3 | PPR repeat |
XP_057809124.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 243 | 291 | 6.8e-58 | 193.3 | PPR repeat family |
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 246 | 273 | 5.7e-51 | 168.0 | PPR repeat |
XP_057809124.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 269 | 328 | 1.2e-43 | 147.7 | Pentatricopeptide repeat domain |
XP_057809124.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 279 | 327 | 6.8e-58 | 193.3 | PPR repeat family |
XP_057809124.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 306 | 362 | 1.2e-43 | 147.7 | Pentatricopeptide repeat domain |
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 318 | 344 | 5.7e-51 | 168.0 | PPR repeat |
XP_057809124.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 337 | 431 | 3.2e-25 | 89.3 | Pentatricopeptide repeat-containing protein |
XP_057809124.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 351 | 396 | 6.8e-58 | 193.3 | PPR repeat family |
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 352 | 381 | 5.7e-51 | 168.0 | PPR repeat |
XP_057809124.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 373 | 432 | 1.2e-43 | 147.7 | Pentatricopeptide repeat domain |
XP_057809124.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 405 | 467 | 3.2e-25 | 89.3 | Pentatricopeptide repeat-containing protein |
XP_057809124.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 420 | 466 | 6.8e-58 | 193.3 | PPR repeat family |
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 422 | 452 | 5.7e-51 | 168.0 | PPR repeat |
XP_057809124.1 |
Pfam | PF01535 |
PPR | Repeat | 457 | 484 | 5.7e-51 | 168.0 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。