当前解析结果
SmilChr01G002144| 统一新 Gene ID | SmilChr01G002144 |
|---|---|
| 名称 | SmilChr01G002144 |
| 描述 | E3 ubiquitin-protein ligase SINAT2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37430274 - 37436163 / + |
| NCBI Gene ID | LOC131023819 |
|---|---|
| GeneID | 131023819 |
| locus_tag | - |
| NCBI Name | LOC131023819 |
| 原始查询 | SmilChr01G002144 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase SINAT2-like |
| 产物 | E3 ubiquitin-protein ligase SINAT2-like |
| Arabidopsis | AT3G58040 (SINAT2)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824973] identity=68.2; qcov=1.01; evalue=9e-162; confidence=high |
| Rice | Os03g0356414 (OsDIS1)- identity=72; qcov=0.866; evalue=3.26e-149; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0007275 (multicellular organism development); GO:0008270 (zinc ion binding); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03145 (Sina_TRAF); PF21361 (Sina_ZnF); PF21362 (Sina_RING) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023819 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057809409.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057809409.1 |
| 3 | Autophagic vesicle | Autophagic vesicle | 0.60000 | XP_057809409.1 |
| 4 | Autophagosome | Autophagosome | 0.60000 | XP_057809409.1 |
| 5 | Nucleus | 细胞核 | 0.40000 | XP_057809409.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37433277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr1:37434990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B53,B67,B93,C2 |
Chr1:37435083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C1,C17,C31,C4,C49 |
Chr1:37435149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B53,B67,B93,C2 |
Chr1:37435158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr1:37435192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr1:37435602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr1:37435604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:37435619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B104,C15,D10,D11 |
Chr1:37435728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,D7 |
Chr1:37435748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C2 |
Chr1:37435844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C1,C17,C31,C4,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809409.1PF21362
Sina_RING 57-91 aa
PF21361
Sina_ZnF 105-180 aa
PF03145
Sina_TRAF 200-296 aa
XP_057809418.1PF21362
Sina_RING 57-91 aa
PF21361
Sina_ZnF 105-180 aa
PF03145
Sina_TRAF 200-296 aa
XP_057809425.1PF21362
Sina_RING 57-91 aa
PF21361
Sina_ZnF 105-180 aa
PF03145
Sina_TRAF 200-296 aa
XP_057809431.1PF21362
Sina_RING 57-91 aa
PF21361
Sina_ZnF 105-180 aa
PF03145
Sina_TRAF 200-296 aa
XP_057809438.1PF21362
Sina_RING 57-91 aa
PF21361
Sina_ZnF 105-180 aa
PF03145
Sina_TRAF 200-296 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809409.1 |
Pfam | PF21362 |
Sina_RING | Domain | 57 | 91 | 1.2e-13 | 51.7 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057809409.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 105 | 180 | 7.3e-29 | 100.7 | Sina, zinc finger |
XP_057809409.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 200 | 296 | 2.7e-33 | 115.1 | Sina, TRAF-like domain |
XP_057809418.1 |
Pfam | PF21362 |
Sina_RING | Domain | 57 | 91 | 1.2e-13 | 51.7 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057809418.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 105 | 180 | 7.3e-29 | 100.7 | Sina, zinc finger |
XP_057809418.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 200 | 296 | 2.7e-33 | 115.1 | Sina, TRAF-like domain |
XP_057809425.1 |
Pfam | PF21362 |
Sina_RING | Domain | 57 | 91 | 1.2e-13 | 51.7 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057809425.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 105 | 180 | 7.3e-29 | 100.7 | Sina, zinc finger |
XP_057809425.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 200 | 296 | 2.7e-33 | 115.1 | Sina, TRAF-like domain |
XP_057809431.1 |
Pfam | PF21362 |
Sina_RING | Domain | 57 | 91 | 1.2e-13 | 51.7 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057809431.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 105 | 180 | 7.3e-29 | 100.7 | Sina, zinc finger |
XP_057809431.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 200 | 296 | 2.7e-33 | 115.1 | Sina, TRAF-like domain |
XP_057809438.1 |
Pfam | PF21362 |
Sina_RING | Domain | 57 | 91 | 1.2e-13 | 51.7 | E3 ubiquitin-protein ligase sina/sinah, RING finger |
XP_057809438.1 |
Pfam | PF21361 |
Sina_ZnF | Domain | 105 | 180 | 7.3e-29 | 100.7 | Sina, zinc finger |
XP_057809438.1 |
Pfam | PF03145 |
Sina_TRAF | Domain | 200 | 296 | 2.7e-33 | 115.1 | Sina, TRAF-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。