当前解析结果
SmilChr01G002155| 统一新 Gene ID | SmilChr01G002155 |
|---|---|
| 名称 | SmilChr01G002155 |
| 描述 | putative late blight resistance protein homolog R1B-12 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37542781 - 37545537 / - |
| NCBI Gene ID | LOC131007673 |
|---|---|
| GeneID | 131007673 |
| locus_tag | - |
| NCBI Name | LOC131007673 |
| 原始查询 | SmilChr01G002155 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-12 |
| 产物 | putative late blight resistance protein homolog R1B-12 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=29; qcov=0.815; evalue=7.58e-70; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=29.3; qcov=0.822; evalue=2.51e-74; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007673 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057790591.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057790591.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057790591.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790591.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790591.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37543044 |
A |
AC |
1bp_insertion | frameshift_variant | 24 | A20,A6,B103,B110,B114,B127,B130,B137,B18,B27,B36,B54,B63,B66,B76,B77,C13,C14,C21,C3,C49,C7,D1,D2 |
Chr1:37543498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B55,B82,C48,D7 |
Chr1:37543575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr1:37543683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr1:37543714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr1:37543744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,B99 |
Chr1:37543764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,B27,B56,B96 |
Chr1:37543853 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | B17 |
Chr1:37543853 |
C |
CG |
1bp_insertion | CDS_variant | 1 | B17 |
Chr1:37543918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B27,B56,B96 |
Chr1:37543930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B59,B75,C35,C86 |
Chr1:37543996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B135,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790591.1PF00931
NB-ARC 195-355 aa
PF23559
WHD_DRP 440-509 aa
PF23598
LRR_14 570-862 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790591.1 |
Pfam | PF00931 |
NB-ARC | Domain | 195 | 355 | 8.5e-39 | 133.6 | NB-ARC domain |
XP_057790591.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 440 | 509 | 2.8e-18 | 66.4 | Disease resistance protein Winged helix domain |
XP_057790591.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 570 | 862 | 7.2e-18 | 65.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。