Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002179`

染色体: Chr01 坐标: 37890296-37898608 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002179`
名称	SmilChr01G002179
描述	uncharacterized SmilChr01G002179
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	37890296 - 37898608 / `+`

ID 对照

NCBI Gene ID	`LOC131024158`
GeneID	`131024158`
locus_tag	`-`
NCBI Name	`LOC131024158`
原始查询	`SmilChr01G002179`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Peptidase M20/M25/M40 family protein [Source:NCBI gene (formerly Entrezgene);Acc:841046]; symbol=AT1G44820; hit=AT1G44820; species=arabidopsis; confidence=high
产物	Peptidase M20/M25/M40 family protein [Source:NCBI gene (formerly Entrezgene);Acc:841046]; symbol=AT1G44820; hit=AT1G44820; species=arabidopsis; confidence=high
Arabidopsis	`AT1G44820` (AT1G44820) Peptidase M20/M25/M40 family protein [Source:NCBI gene (formerly Entrezgene);Acc:841046] identity=65.8; qcov=0.966; evalue=0; confidence=high
Rice	`Os06g0210200` - identity=64.4; qcov=0.934; evalue=0; confidence=high
GO	GO:0004046 (aminoacylase activity); GO:0005737 (cytoplasm); GO:0006520 (amino acid metabolic process)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01546 (Peptidase_M20); PF04389 (Peptidase_M28)
InterPro	-
eggNOG	-
NR	GeneID:131024158

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057809654.1`
2	Endoplasmic reticulum lumen	内质网腔	0.40000	`XP_057809654.1`
3	Vacuole	液泡	0.20000	`XP_057809654.1`
4	Nucleus	细胞核	0.00000	`XP_057809654.1`
5	Chromosome	染色体	0.00000	`XP_057809654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:37890642`	`TCC`	`T`	2bp_deletion	frameshift_variant	124	A11,A13,A14,A16,A19,A2,A4,A5,A6,A9,B1,B10,B100,B101,B102,B103,B104,B108,B110,B112,B113,B114,B115,B118,B12,B120,B121,B124,B126,B129,B132,B133,B135,B136,B139,B14,B15,B16,B20,B26,B28,B29,B3,B36,B37,B4,B41,B42,B43,B46,B50,B51,B52,B57,B58,B59,B6,B60,B61,B63,B64,B7,B72,B74,B76,B79,B8,B80,B81,B83,B85,B91,B93,B94,B97,B98,C11,C18,C19,C21,C24,C25,C28,C29,C3,C36,C38,C40,C43,C47,C50,C51,C52,C53,C55,C57,C58,C59,C6,C60,C61,C62,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C75,C78,C79,C8,C80,C81,C82,C84,C9,D1,D11,D9
`Chr1:37890645`	`TC`	`T`	1bp_deletion	frameshift_variant	124	A11,A13,A14,A16,A19,A2,A4,A5,A6,A9,B1,B10,B100,B101,B102,B103,B104,B108,B110,B112,B113,B114,B115,B118,B12,B120,B121,B124,B126,B129,B132,B133,B135,B136,B139,B14,B15,B16,B20,B26,B28,B29,B3,B36,B37,B4,B41,B42,B43,B46,B50,B51,B52,B57,B58,B59,B6,B60,B61,B63,B64,B7,B72,B74,B76,B79,B8,B80,B81,B83,B85,B91,B93,B94,B97,B98,C11,C18,C19,C21,C24,C25,C28,C29,C3,C36,C38,C40,C43,C47,C50,C51,C52,C53,C55,C57,C58,C59,C6,C60,C61,C62,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C75,C78,C79,C8,C80,C81,C82,C84,C9,D1,D11,D9
`Chr1:37890681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr1:37890773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C25,C34,D8
`Chr1:37890799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr1:37890805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,A16,C45
`Chr1:37890956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B13,C2,D4
`Chr1:37891069`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B130
`Chr1:37891069`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B130
`Chr1:37891144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B137,B19,B21
`Chr1:37891324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr1:37891578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809654.1

442 aa

221

442

Peptidase_M28

Peptidase_M20

PF04389 Peptidase_M28 88-202 aa PF01546 Peptidase_M20 101-434 aa

XP_057809659.1

442 aa

221

442

Peptidase_M28

Peptidase_M20

PF04389 Peptidase_M28 88-202 aa PF01546 Peptidase_M20 101-434 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809654.1`	Pfam	`PF04389`	Peptidase_M28	Domain	88	202	1.1e-07	32.5	Peptidase family M28
`XP_057809654.1`	Pfam	`PF01546`	Peptidase_M20	Family	101	434	5e-33	115.5	Peptidase family M20/M25/M40
`XP_057809659.1`	Pfam	`PF04389`	Peptidase_M28	Domain	88	202	1.1e-07	32.5	Peptidase family M28
`XP_057809659.1`	Pfam	`PF01546`	Peptidase_M20	Family	101	434	5e-33	115.5	Peptidase family M20/M25/M40

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009101687.1
CCAACCTCTCACAATCTCGGAAGCTGAATTCCACCCGTCAAGAGCTGAAGTTTAACTAATGTGAGTTCAAGATAGCAACTGCAAATTCGAACAACTGAAAAAGGACTAAGAAACAATACTAAAACAAGAAAACTAGAGTTTCAACTCTTACAAATTCAATCTGTCACACAGAAAAAGTACAATTTCTAACTCTGAAATAGTTTCTACAGATTCACTGATTTAATCTAATCATCGAAAATCAATCCCCAAAAATATTTCCC...

XR_009101674.1
CCAACCTCTCACAATCTCGGAAGCTGAATTCCACCCGTCAAGAGCTGAAGTTTAACTAATGTGAGTTCAAGATAGCAACTGCAAATTCGAACAACTGAAAAAGGACTAAGAAACAATACTAAAACAAGAAAACTAGAGTTTCAACTCTTACAAATTCAATCTGTCACACAGAAAAAGTACAATTTCTAACTCTGAAATAGTTTCTACAGATTCACTGATTTAATCTAATCATCGAAAATCAATCCCCAAAAATATTTCCC...

CDS

2 records

下载 CDS FASTA

LOC131024158
ATGTCCACGCGCCGCCGGTCATCACTCATCTCCGCTGCAGCACTCCTCCTCCTCCTCCTCCTTCTCTCACCTCTCTCCACCGCCAACCCCCAAGAATCCGACCCCATATCCCGCTTCCAAAACTACCTAAGAATCAACACCGCTCACCCCAATCCAAACTACACCGGCGCCGTCGAGTACCTCGCCGCCTTCGCCGCCACGATCCCCACCCTCCAAAGCCGAACCCTCCACCTCACCACCCCTGACAAGCCCCTCCTCCT...

Protein

2 records

下载 Protein FASTA

XP_057809654.1
MSTRRRSSLISAAALLLLLLLLSPLSTANPQESDPISRFQNYLRINTAHPNPNYTGAVEYLAAFAATIPTLQSRTLHLTTPDKPLLLITWPGSNPSLPSILLNSHLDSVPAEPSKWLHPPFAAHRAADGRIYARGAQDDKCIGMQYLEAIREFKKSNLDHTPLRTVHISYVPEEEIGGFDGMMKFVESEEFQELNVGFVLDEGQASVGEEFRVFYADRSPWHVVIRARGPPGHGSRMYDGGAMENLMKSVEMMMKFRENS...

XP_057809659.1
MSTRRRSSLISAAALLLLLLLLSPLSTANPQESDPISRFQNYLRINTAHPNPNYTGAVEYLAAFAATIPTLQSRTLHLTTPDKPLLLITWPGSNPSLPSILLNSHLDSVPAEPSKWLHPPFAAHRAADGRIYARGAQDDKCIGMQYLEAIREFKKSNLDHTPLRTVHISYVPEEEIGGFDGMMKFVESEEFQELNVGFVLDEGQASVGEEFRVFYADRSPWHVVIRARGPPGHGSRMYDGGAMENLMKSVEMMMKFRENS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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