Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002181

染色体: Chr01 坐标: 37944382-37947062 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002181
名称SmilChr01G002181
描述uncharacterized SmilChr01G002181
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向37944382 - 37947062 / -

ID 对照

NCBI Gene IDLOC131024191
GeneID131024191
locus_tag-
NCBI NameLOC131024191
原始查询SmilChr01G002181

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Histone H3 K4-specific methyltransferase SET7/9 family protein [Source:NCBI gene (formerly Entrezgene);Acc:844102]; symbol=AT1G77660; hit=AT1G77660; species=arabidopsis; confidence=high
产物Histone H3 K4-specific methyltransferase SET7/9 family protein [Source:NCBI gene (formerly Entrezgene);Acc:844102]; symbol=AT1G77660; hit=AT1G77660; species=arabidopsis; confidence=high
ArabidopsisAT1G77660 (AT1G77660)
Histone H3 K4-specific methyltransferase SET7/9 family protein [Source:NCBI gene (formerly Entrezgene);Acc:844102]
identity=60.7; qcov=1.02; evalue=8.34e-164; confidence=high
RiceOs09g0453900 (P0488D02.28-1)
-
identity=71.2; qcov=0.651; evalue=2.11e-136; confidence=high
GO-
KEGG-
PfamPF02493 (MORN)
InterPro-
eggNOG-
NRGeneID:131024191

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.40000 XP_057809687.1
2 Chloroplast membrane 叶绿体膜 0.40000 XP_057809687.1
3 Nucleus membrane 核膜 0.20000 XP_057809687.1
4 Endoplasmic reticulum 内质网 0.20000 XP_057809687.1
5 Chloroplast 叶绿体 0.20000 XP_057809687.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:37944842 C T EMS_canonical_SNV CDS_variant 2 C47,C51
Chr1:37944845 G A EMS_canonical_SNV CDS_variant 1 B138
Chr1:37945021 C T EMS_canonical_SNV CDS_variant 1 B26
Chr1:37945182 C T EMS_canonical_SNV CDS_variant 2 C47,C51
Chr1:37946040 GC G 1bp_deletion frameshift_variant 1 B90
Chr1:37946040 GC G 1bp_deletion CDS_variant 1 B90
Chr1:37946042 G A EMS_canonical_SNV CDS_variant 1 B90
Chr1:37946368 C T EMS_canonical_SNV CDS_variant 2 A18,B53
Chr1:37946387 C T EMS_canonical_SNV CDS_variant 1 B13
Chr1:37946618 G A EMS_canonical_SNV CDS_variant 1 B25
Chr1:37946638 G A EMS_canonical_SNV CDS_variant 1 B107
Chr1:37946660 G A EMS_canonical_SNV CDS_variant 1 B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057809687.1
427 aa
N
1
214
427
MORN
MORN
MORN
MORN
MORN
MORN
MORN
C
PF02493 MORN 187-205 aa PF02493 MORN 210-231 aa PF02493 MORN 233-254 aa PF02493 MORN 256-277 aa PF02493 MORN 279-301 aa PF02493 MORN 304-323 aa PF02493 MORN 325-345 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809687.1 Pfam PF02493 MORN Repeat 187 205 1.2e-38 129.3 MORN repeat
XP_057809687.1 Pfam PF02493 MORN Repeat 210 231 1.2e-38 129.3 MORN repeat
XP_057809687.1 Pfam PF02493 MORN Repeat 233 254 1.2e-38 129.3 MORN repeat
XP_057809687.1 Pfam PF02493 MORN Repeat 256 277 1.2e-38 129.3 MORN repeat
XP_057809687.1 Pfam PF02493 MORN Repeat 279 301 1.2e-38 129.3 MORN repeat
XP_057809687.1 Pfam PF02493 MORN Repeat 304 323 1.2e-38 129.3 MORN repeat
XP_057809687.1 Pfam PF02493 MORN Repeat 325 345 1.2e-38 129.3 MORN repeat

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057953704.1
GATCATTTCCACAGCTGAAACTCTGCTCCCTTCTCTCTCTCTCTCTCTCTCAAATTTCAGACACACTCTTCCTCTCTCACCCACGCCACCCACACACTTCTCTCTTCTACGCTAAACTCCCCGCTCTCGCCGGAGATGATACCGGCGCCGGAGTCCATGTTCGGAGAGATACGAATCCAACGGCGGAGGTTGGCGTGAAATAATGGAAAATCAGAAAAGCCAGCAAAAGCTCACTAGGACCAACTCCTCGTTGCTCCGGT...

CDS

1 records

下载 CDS FASTA
LOC131024191
ATGGAAAATCAGAAAAGCCAGCAAAAGCTCACTAGGACCAACTCCTCGTTGCTCCGGTCATCCCCCACCGTCCGCTCCTCGATTCAAAGCCTCTCCTCGGTGAGCGAGATCGCATCCGATCAGGAAAATTCAGACCTCGAGGAGCAGAAGCCTCACAGAAAGCCATGCCCACCACCTGTTCGACCTATTTCCCCGCGCTTCGCCGCTTCAATTCTCGCCTTTCTCCTCCTCTCCGCCTACGCCCTCCTCAACTGGGACGG...

Protein

1 records

下载 Protein FASTA
XP_057809687.1
MENQKSQQKLTRTNSSLLRSSPTVRSSIQSLSSVSEIASDQENSDLEEQKPHRKPCPPPVRPISPRFAASILAFLLLSAYALLNWDGASTSESLLLALIFVAVLLFLVSKNKALIGKSVVFCKQLCDDCGRRLNLNPCCFYSKNQTKPVQWFIGDPNPEELEELELELNQENVVREGVEFYTNGDIYEGEFHNGKCNGSGVYSFVVNGRYEGDWIDGRYEGYGIESWARGSKYKGQYKQGLRHGYGVYKFYTGDSYAGEW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器