当前解析结果
SmilChr01G002222| 统一新 Gene ID | SmilChr01G002222 |
|---|---|
| 名称 | SmilChr01G002222 |
| 描述 | uncharacterized SmilChr01G002222 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 38659704 - 38661064 / + |
| NCBI Gene ID | LOC131007895 |
|---|---|
| GeneID | 131007895 |
| locus_tag | - |
| NCBI Name | LOC131007895 |
| 原始查询 | SmilChr01G002222 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| 产物 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=27; qcov=0.634; evalue=4.2e-21; confidence=low |
| Rice | Os06g0484800- identity=24.8; qcov=0.718; evalue=2.36e-20; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007895 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057790792.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057790792.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057790792.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057790792.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790792.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:38659754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B47,C29 |
Chr1:38659788 |
G |
GTA |
2bp_insertion | frameshift_variant | 3 | A20,B47,C29 |
Chr1:38659788 |
G |
GTA |
2bp_insertion | CDS_variant | 3 | A20,B47,C29 |
Chr1:38659790 |
CCT |
C |
2bp_deletion | frameshift_variant | 3 | A20,B47,C29 |
Chr1:38659790 |
CCT |
C |
2bp_deletion | CDS_variant | 3 | A20,B47,C29 |
Chr1:38659801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B47,C29 |
Chr1:38659954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C51 |
Chr1:38659955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,C11,C18,C51,C56 |
Chr1:38659968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,C11,C18,C51,C56 |
Chr1:38659972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B20,C11,C18,C51,C56 |
Chr1:38659990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,B86 |
Chr1:38660024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B64,B81,B84,D4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。