当前解析结果
SmilChr01G002238| 统一新 Gene ID | SmilChr01G002238 |
|---|---|
| 名称 | SmilChr01G002238 |
| 描述 | phosphoglucan, water dikinase, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 38926252 - 38933173 / - |
| NCBI Gene ID | LOC131014692 |
|---|---|
| GeneID | 131014692 |
| locus_tag | - |
| NCBI Name | LOC131014692 |
| 原始查询 | SmilChr01G002238 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoglucan, water dikinase, chloroplastic |
| 产物 | phosphoglucan%2C water dikinase%2C chloroplastic |
| Arabidopsis | AT5G26570 (PWD)chloroplastidic phosphoglucan, water dikinase (ATGWD3) [Source:NCBI gene (formerly Entrezgene);Acc:832706] identity=62.7; qcov=0.978; evalue=0; confidence=high |
| Rice | Os12g0297500 (GWD3)- identity=59.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016301 (kinase activity); GO:0016310 (phosphorylation); GO:2001070 (starch binding) |
| KEGG | - |
| Pfam | PF00686 (CBM_20); PF01326 (PPDK_N); PF22973 (GWD1_pHisD); PF31155 (PWD_link) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014692 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057798732.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057798732.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057798732.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798732.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798732.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:38926625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B139,D2 |
Chr1:38926649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B41 |
Chr1:38926772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,B18 |
Chr1:38926796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr1:38926813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B126,C6,C63,C67 |
Chr1:38926859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr1:38926866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B70,C65 |
Chr1:38926877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B122,D5 |
Chr1:38926944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:38926969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,C14,C74 |
Chr1:38926989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr1:38926991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798732.1PF00686
CBM_20 98-182 aa
PF31155
PWD_link 261-458 aa
PF22973
GWD1_pHisD 716-831 aa
PF01326
PPDK_N 885-1201 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798732.1 |
Pfam | PF00686 |
CBM_20 | Family | 98 | 182 | 4.5e-13 | 49.5 | Starch binding domain |
XP_057798732.1 |
Pfam | PF31155 |
PWD_link | Domain | 261 | 458 | 5.3e-102 | 340.5 | Phosphoglucan water dikinase linker domain |
XP_057798732.1 |
Pfam | PF22973 |
GWD1_pHisD | Domain | 716 | 831 | 6.3e-33 | 113.5 | Alpha-glucan water dikinase, phosphohistidine-like domain |
XP_057798732.1 |
Pfam | PF01326 |
PPDK_N | Family | 885 | 1201 | 4.2e-33 | 115.7 | Pyruvate phosphate dikinase, AMP/ATP-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。