当前解析结果
SmilChr01G002243| 统一新 Gene ID | SmilChr01G002243 |
|---|---|
| 名称 | SmilChr01G002243 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 38966646 - 38973172 / - |
| NCBI Gene ID | LOC131014766 |
|---|---|
| GeneID | 131014766 |
| locus_tag | - |
| NCBI Name | LOC131014766 |
| 原始查询 | SmilChr01G002243 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT4G20140 (GSO1)Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=34.4; qcov=1.05; evalue=0; confidence=low |
| Rice | Os02g0211800 (OsRLCK65)- identity=38.7; qcov=0.878; evalue=0; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014766 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798838.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798838.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798838.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798838.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798838.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:38966766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B22,B41 |
Chr1:38966878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:38966950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:38966994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr1:38966997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:38967009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:38967019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C47,C51 |
Chr1:38967074 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B35,B75 |
Chr1:38967585 |
T |
TTG |
2bp_insertion | frameshift_variant | 1 | C50 |
Chr1:38967585 |
T |
TTG |
2bp_insertion | CDS_variant | 1 | C50 |
Chr1:38967586 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:38967602 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B127 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798838.1PF08263
LRRNT_2 28-68 aa
PF00560
LRR_1 95-117 aa
PF13516
LRR_6 164-180 aa
PF00560
LRR_1 167-189 aa
PF00560
LRR_1 266-285 aa
PF00560
LRR_1 289-312 aa
PF00560
LRR_1 338-355 aa
PF00560
LRR_1 480-501 aa
PF00560
LRR_1 601-623 aa
PF13855
LRR_8 601-660 aa
PF00560
LRR_1 698-719 aa
PF00560
LRR_1 745-767 aa
PF13855
LRR_8 745-804 aa
PF00560
LRR_1 770-791 aa
PF13516
LRR_6 792-807 aa
PF00560
LRR_1 794-810 aa
PF00069
Pkinase 915-1185 aa
PF07714
PK_Tyr_Ser-Thr 918-1187 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798838.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 68 | 1.7e-08 | 35.3 | Leucine rich repeat N-terminal domain |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 95 | 117 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 164 | 180 | 1.6e-07 | 31.5 | Leucine Rich repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 189 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 266 | 285 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 289 | 312 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 338 | 355 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 480 | 501 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 601 | 623 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 601 | 660 | 3.4e-52 | 174.8 | Leucine rich repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 698 | 719 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 745 | 767 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 745 | 804 | 3.4e-52 | 174.8 | Leucine rich repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 770 | 791 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 792 | 807 | 1.6e-07 | 31.5 | Leucine Rich repeat |
XP_057798838.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 794 | 810 | 2.8e-60 | 187.9 | Leucine Rich Repeat |
XP_057798838.1 |
Pfam | PF00069 |
Pkinase | Domain | 915 | 1185 | 9.4e-43 | 147.2 | Protein kinase domain |
XP_057798838.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 918 | 1187 | 2.3e-43 | 149.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。