Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002266`

染色体: Chr01 坐标: 39447982-39450838 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002266`
名称	SmilChr01G002266
描述	protein DETOXIFICATION 54-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	39447982 - 39450838 / `+`

ID 对照

NCBI Gene ID	`LOC131014885`
GeneID	`131014885`
locus_tag	`-`
NCBI Name	`LOC131014885`
原始查询	`SmilChr01G002266`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 54-like
产物	protein DETOXIFICATION 54-like
Arabidopsis	`AT1G71870` (AT1G71870) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:843518] identity=70.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os03g0839200` (OSJNBa0042I09.8) - identity=57; qcov=1; evalue=1.11e-176; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131014885

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057799013.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057799021.1`
3	Cell membrane	细胞膜	0.20000	`XP_057799013.1`
4	Nucleus	细胞核	0.00000	`XP_057799013.1`
5	Chromosome	染色体	0.00000	`XP_057799013.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:39448978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C24
`Chr1:39449048`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B140
`Chr1:39449048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:39449087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B33
`Chr1:39449374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A21,B130
`Chr1:39449673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:39449810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:39450225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B25
`Chr1:39450261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr1:39450332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr1:39450399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B9,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799013.1

510 aa

255

510

MatE

PF01554 MatE 48-207 aa PF01554 MatE 271-432 aa

XP_057799021.1

485 aa

242

485

MatE

PF01554 MatE 23-182 aa PF01554 MatE 246-407 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799013.1`	Pfam	`PF01554`	MatE	Family	48	207	1.6e-64	217.2	MatE
`XP_057799013.1`	Pfam	`PF01554`	MatE	Family	271	432	1.6e-64	217.2	MatE
`XP_057799021.1`	Pfam	`PF01554`	MatE	Family	23	182	1.4e-64	217.4	MatE
`XP_057799021.1`	Pfam	`PF01554`	MatE	Family	246	407	1.4e-64	217.4	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943038.1
TATTTTTATAAATTGATATAACTAGATAAAGCTTATAGTATAATTCCATTTATTTAATATTCAATATTATATTTATTCATCAATGGAACATTTTAGAGGGGGATTTTTTTTTTTTGTATTTCTCTTTTAATTTATGTGTATGGATGATGCTTGCAACAGTGAAGCAAATGGAAAAGAAGTACGAGAAAAATCCAATCTCTAAATATTGTCGAAATTGCAAATCACAACTTGAGCAAGAAAATGGGGTGATAGAGATATTA...

XM_057943030.1
ATTTATTTAATATTCAATATTATATTTATTCATCAATGGAACATTTTAGAGGGGGATTTTTTTTTTTTGTATTTCTCTTTTAATTTATGTGTATGGATGATGCTTGCAACAGTGAAGCAAATGGAAAAGAAGTACGAGAAAAATCCAATCTCTAAATATTGTCGAAATTGCAAATCACAACTTGAGCAAGAAAATGGGGTGATAGAGATATTATTTTTACTTTTTTAGTAACCTTCTTGTGATAATTTCCATAATCTGTG...

CDS

2 records

下载 CDS FASTA

LOC131014885
ATGGCTGAGAAGAAAAGCTCCTCACAGGTGGTTGATGAATTGAAGGAATTATGGGCAATGGCACTTCCAATAACTGCAATGAACTGTTTAGTGTATGTTAGGGCAGTTGTATCTGTGCTCTTCTTGGGCAGATTAGGCAGCCTAGAGCTAGCAGGTGGTGCTCTGAGCATCGGCTTCACGAACATCACCGGCTACTCCGTGCTAGTAGGGTTGGCCTCCGGCCTTGAGCCGGTGTGCAGCCAGGCCTACGGCTGCAAGAA...

LOC131014885
ATGCAATTAAACCTTGTCTATTTTTTGCAATTTAGTGTTTGCTTATCTATTTTTTGTTGTAATTTATGTGAAATATTGTTTGAATTGTGTTTTGGAAAAAAGGTGGTTGATGAATTGAAGGAATTATGGGCAATGGCACTTCCAATAACTGCAATGAACTGTTTAGTGTATGTTAGGGCAGTTGTATCTGTGCTCTTCTTGGGCAGATTAGGCAGCCTAGAGCTAGCAGGTGGTGCTCTGAGCATCGGCTTCACGAACAT...

Protein

2 records

下载 Protein FASTA

XP_057799013.1
MQLNLVYFLQFSVCLSIFCCNLCEILFELCFGKKVVDELKELWAMALPITAMNCLVYVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGCKNWDLLSVSLHRMIAILFLAIVPISVLWINLETIMMFMGQDGEITRMAATYCVYSLPDLLTNTLLQPLRVYLRSQGVTKPQMWCTLLAVAFHIPLNYGLVVVMGLGVPGVAMASVLTNLHMMVLMMGYVCIYGRWEWRWKVAGDGGGDGD...

XP_057799021.1
MAEKKSSSQVVDELKELWAMALPITAMNCLVYVRAVVSVLFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGCKNWDLLSVSLHRMIAILFLAIVPISVLWINLETIMMFMGQDGEITRMAATYCVYSLPDLLTNTLLQPLRVYLRSQGVTKPQMWCTLLAVAFHIPLNYGLVVVMGLGVPGVAMASVLTNLHMMVLMMGYVCIYGRWEWRWKVAGDGGGDGDGIGALLKLAVPSCIGICLEWWWYEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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