Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002268`

染色体: Chr01 坐标: 39458046-39461824 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002268`
名称	SmilChr01G002268
描述	protein-tyrosine-phosphatase PTP1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	39458046 - 39461824 / `+`

ID 对照

NCBI Gene ID	`LOC131014903`
GeneID	`131014903`
locus_tag	`-`
NCBI Name	`LOC131014903`
原始查询	`SmilChr01G002268`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein-tyrosine-phosphatase PTP1
产物	protein-tyrosine-phosphatase PTP1
Arabidopsis	`AT1G71860` (PTP1) protein tyrosine phosphatase 1 [Source:NCBI gene (formerly Entrezgene);Acc:843516] identity=60.5; qcov=0.978; evalue=5.56e-112; confidence=high
Rice	`Os12g0174800` (OsPP127) - identity=42.6; qcov=0.883; evalue=2.53e-51; confidence=medium
GO	GO:0004725 (protein tyrosine phosphatase activity); GO:0006470 (protein dephosphorylation)
KEGG	-
Pfam	PF00102 (Y_phosphatase); PF13350 (Y_phosphatase3)
InterPro	-
eggNOG	-
NR	GeneID:131014903

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057799041.1`
2	Cytosol	细胞质基质	1.00000	`XP_057799041.1`
3	Cell membrane	细胞膜	0.80000	`XP_057799041.1`
4	Cell projection	细胞突起	0.40000	`XP_057799050.1`
5	Ruffle	Ruffle	0.20000	`XP_057799041.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:39458515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr1:39459446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,B21,B25
`Chr1:39459497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B81,D11
`Chr1:39460109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B121,B9,D6
`Chr1:39460660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,B121,B47
`Chr1:39460661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799041.1

346 aa

173

346

Y_phosphatase

Y_phosphatase3

PF00102 Y_phosphatase 93-330 aa PF13350 Y_phosphatase3 218-285 aa

XP_057799050.1

274 aa

137

274

Y_phosphatase

PF00102 Y_phosphatase 93-272 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799041.1`	Pfam	`PF00102`	Y_phosphatase	Domain	93	330	2.5e-74	250.6	Protein-tyrosine phosphatase
`XP_057799041.1`	Pfam	`PF13350`	Y_phosphatase3	Domain	218	285	7.6e-05	23.5	Tyrosine phosphatase family
`XP_057799050.1`	Pfam	`PF00102`	Y_phosphatase	Domain	93	272	3.8e-51	174.7	Protein-tyrosine phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943058.1
AATTGATATCCATATTGATGTTTATTATATTTCGAAATATTCGAAAATGCCGCTGACTAATGAGTGAACTGTGAATAGGCATTAATGTTTAATGTCCAAATCATTTCTTTGCATGAACCATGTTTCAGTCGATCCGCGAATGTGAAACTTTTTTGAGATAAAACAACAGCAAAAACGAAAGGGGGAAAATAGGGACAGAGAAACCCTAACGCCGAGAAATCACGGGTAACGTCGTCGCAAATCGCCGCCGCGGCCGGAGA...

XM_057943067.1
TAATGAGTGAACTGTGAATAGGCATTAATGTTTAATGTCCAAATCATTTCTTTGCATGAACCATGTTTCAGTCGATCCGCGAATGTGAAACTTTTTTGAGATAAAACAACAGCAAAAACGAAAGGGGGAAAATAGGGACAGAGAAACCCTAACGCCGAGAAATCACGGGTAACGTCGTCGCAAATCGCCGCCGCGGCCGGAGATCGGCGATGGCCAGTAACTCCACAAAATCCCCCTCCGCCGCCGGAGCCGTCGCAGCC...

CDS

2 records

下载 CDS FASTA

LOC131014903
ATGGCCAGTAACTCCACAAAATCCCCCTCCGCCGCCGGAGCCGTCGCAGCCGTTCCAGCTTCCCCGACGCTGGCAAAATCTATAGATTTATCTCTCGATTCGACGATGCCGAGGCCGCGCCTCTCCGCTGATCAGCTGCGCCACTGCTCCGAAGCTCTCCAGCACTTCAAAACTAAAGTTCCGCAGAAGATCCGCCAAGAATTCATGACCTTGCAGGCAAATAGGATGACAGCCTTGGATATGAGGAGTAGATGTACTGT...

Protein

2 records

下载 Protein FASTA

XP_057799041.1
MASNSTKSPSAAGAVAAVPASPTLAKSIDLSLDSTMPRPRLSADQLRHCSEALQHFKTKVPQKIRQEFMTLQANRMTALDMRSRCTVALDSVNISKNRYTDVLPFDDNRVTLKQCADYRSSARGYVNASFITTSENVSRFIATQGPLSHTSEDFWEMIIQYQCPVIVMLTRLVDNYRTLKCVDYFQAENGPREFGNICIATKKMETADTSLIWRSLEVKYKESEEPPLSVLHVQYPEWPDHGVPKDTLAVREIFRRISSV...

XP_057799050.1
MASNSTKSPSAAGAVAAVPASPTLAKSIDLSLDSTMPRPRLSADQLRHCSEALQHFKTKVPQKIRQEFMTLQANRMTALDMRSRCTVALDSVNISKNRYTDVLPFDDNRVTLKQCADYRSSARGYVNASFITTSENVSRFIATQGPLSHTSEDFWEMIIQYQCPVIVMLTRLVDNYRTLKCVDYFQAENGPREFGNICIATKKMETADTSLIWRSLEVKYKESEEPPLSVLHVQYPEWPDHGVPKDTLAVREIFRRISSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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