Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002292`

染色体: Chr01 坐标: 39753484-39761977 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002292`
名称	SmilChr01G002292
描述	inactive poly [ADP-ribose] polymerase RCD1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	39753484 - 39761977 / `+`

ID 对照

NCBI Gene ID	`LOC131015116`
GeneID	`131015116`
locus_tag	`-`
NCBI Name	`LOC131015116`
原始查询	`SmilChr01G002292`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	inactive poly [ADP-ribose] polymerase RCD1-like
产物	inactive poly [ADP-ribose] polymerase RCD1-like
Arabidopsis	`AT1G32230` (RCD1) WWE protein-protein interaction domain protein family [Source:NCBI gene (formerly Entrezgene);Acc:840115] identity=38.4; qcov=1.01; evalue=7.78e-120; confidence=medium
Rice	`Os10g0577800` (TWI1) - identity=33.4; qcov=1.07; evalue=9.67e-87; confidence=low
GO	GO:0003950 (NAD+ poly-ADP-ribosyltransferase activity)
KEGG	-
Pfam	PF02825 (WWE); PF12174 (RST); PF23467 (WWE_5)
InterPro	-
eggNOG	-
NR	GeneID:131015116

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799353.1`
2	Chromosome	染色体	0.00000	`XP_057799353.1`
3	Centromere	着丝粒	0.00000	`XP_057799353.1`
4	Chromatin	染色质	0.00000	`XP_057799353.1`
5	Telomere	端粒	0.00000	`XP_057799353.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:39754808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr1:39754817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B7,C45,C58
`Chr1:39754986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:39755110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B11
`Chr1:39755145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B8,B82,C34,D9
`Chr1:39755157`	`GCA`	`G`	2bp_deletion	frameshift_variant	1	A24
`Chr1:39755157`	`GCA`	`G`	2bp_deletion	CDS_variant	1	A24
`Chr1:39756338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799353.1

571 aa

286

571

WWE_5

WWE

RST

PF23467 WWE_5 83-162 aa PF02825 WWE 95-152 aa PF12174 RST 493-557 aa

XP_057799362.1

571 aa

286

571

WWE_5

WWE

RST

PF23467 WWE_5 83-162 aa PF02825 WWE 95-152 aa PF12174 RST 493-557 aa

XP_057799368.1

571 aa

286

571

WWE_5

WWE

RST

PF23467 WWE_5 83-162 aa PF02825 WWE 95-152 aa PF12174 RST 493-557 aa

XP_057799375.1

571 aa

286

571

WWE_5

WWE

RST

PF23467 WWE_5 83-162 aa PF02825 WWE 95-152 aa PF12174 RST 493-557 aa

XP_057799381.1

571 aa

286

571

WWE_5

WWE

RST

PF23467 WWE_5 83-162 aa PF02825 WWE 95-152 aa PF12174 RST 493-557 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799353.1`	Pfam	`PF23467`	WWE_5	Domain	83	162	7.1e-31	107.4	WWE domain
`XP_057799353.1`	Pfam	`PF02825`	WWE	Domain	95	152	2e-05	25.6	WWE domain
`XP_057799353.1`	Pfam	`PF12174`	RST	Domain	493	557	2.5e-29	101.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057799362.1`	Pfam	`PF23467`	WWE_5	Domain	83	162	7.1e-31	107.4	WWE domain
`XP_057799362.1`	Pfam	`PF02825`	WWE	Domain	95	152	2e-05	25.6	WWE domain
`XP_057799362.1`	Pfam	`PF12174`	RST	Domain	493	557	2.5e-29	101.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057799368.1`	Pfam	`PF23467`	WWE_5	Domain	83	162	7.1e-31	107.4	WWE domain
`XP_057799368.1`	Pfam	`PF02825`	WWE	Domain	95	152	2e-05	25.6	WWE domain
`XP_057799368.1`	Pfam	`PF12174`	RST	Domain	493	557	2.5e-29	101.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057799375.1`	Pfam	`PF23467`	WWE_5	Domain	83	162	7.1e-31	107.4	WWE domain
`XP_057799375.1`	Pfam	`PF02825`	WWE	Domain	95	152	2e-05	25.6	WWE domain
`XP_057799375.1`	Pfam	`PF12174`	RST	Domain	493	557	2.5e-29	101.7	RCD1-SRO-TAF4 (RST) plant domain
`XP_057799381.1`	Pfam	`PF23467`	WWE_5	Domain	83	162	7.1e-31	107.4	WWE domain
`XP_057799381.1`	Pfam	`PF02825`	WWE	Domain	95	152	2e-05	25.6	WWE domain
`XP_057799381.1`	Pfam	`PF12174`	RST	Domain	493	557	2.5e-29	101.7	RCD1-SRO-TAF4 (RST) plant domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057943370.1
TGAAAAACCTAGAAAAAGAAATAGAAAAGGAAAAAAAGTGCCAAAGCGGCGTCGTTTCATAATGAGTAGCAGCAGGCAATCTGAAGCCCTTTGATTTGACTTTCATCAAACCCCCATCGCCCAACTCCCGACGCTCCCTCTCTCTCTCCGGTCCGAAGGCTTTGTCCACTTGCTGCAATGGCTTTGTTTCTTTGAATCAAAACCCGAGGCGTATGCAACTCTTTTCGCTGTACTATTGGCTGTGAATTGGTTGTTAAGCA...

XM_057943379.1
AGCGGCGTCGTTTCATAATGAGTAGCAGCAGGCAATCTGAAGCCCTTTGATTTGACTTTCATCAAACCCCCATCGCCCAACTCCCGACGCTCCCTCTCTCTCTCCGGTCCGAAGTGACTCTGATATTCAGGCTTTGTCCACTTGCTGCAATGGCTTTGTTTCTTTGAATCAAAACCCGAGGCGTATGCAACTCTTTTCGCTGTACTATTGGCTGTGAATTGGTTGTTAAGCATTGATCAAGTTGGGAAAAATGACCACAA...

CDS

5 records

下载 CDS FASTA

LOC131015116
ATGACCACAAAGTTCGAAAAGGTATTGGATAGTGGCAGAAGTGTCATTGTTGATCTGAAGAGAAAGCGGTCAGAACGATGCACCATCCCTTCAAAGGGAGCTAGTCACGTGCCGTTCACTCTGCAATGCCCTCCGAGATCATCGATCAAGAAGATTGACAAGCGGAGGAAACTAGATGGATCAATAAACAAGTATAGCAGCTATACCTTTCCATCTGGGAAGCGTCTGCTTAAATATTATTCCAACTTTAAGAAAAGTGG...

Protein

5 records

下载 Protein FASTA

XP_057799353.1
MTTKFEKVLDSGRSVIVDLKRKRSERCTIPSKGASHVPFTLQCPPRSSIKKIDKRRKLDGSINKYSSYTFPSGKRLLKYYSNFKKSGNLQRLMYHDNDDWNDFSLDIIAHVNKDLRVDKPAIEVEFNGTKILLDFLHMMQLDLNTGMHRPIAWIDISGNCFFPEIFSDYDETDSYANEFAEGEGDKDMGNGPFGSNGINLHLEIAIHGLDNESSGESNVIVEQVHAHDSAAPRKCDDETNDSCAKASYEEGNVKCEDSQQ...

XP_057799362.1
MTTKFEKVLDSGRSVIVDLKRKRSERCTIPSKGASHVPFTLQCPPRSSIKKIDKRRKLDGSINKYSSYTFPSGKRLLKYYSNFKKSGNLQRLMYHDNDDWNDFSLDIIAHVNKDLRVDKPAIEVEFNGTKILLDFLHMMQLDLNTGMHRPIAWIDISGNCFFPEIFSDYDETDSYANEFAEGEGDKDMGNGPFGSNGINLHLEIAIHGLDNESSGESNVIVEQVHAHDSAAPRKCDDETNDSCAKASYEEGNVKCEDSQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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