Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002303`

染色体: Chr01 坐标: 39892365-39900885 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002303`
名称	SmilChr01G002303
描述	peroxisomal acyl-coenzyme A oxidase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	39892365 - 39900885 / `-`

ID 对照

NCBI Gene ID	`LOC131015230`
GeneID	`131015230`
locus_tag	`-`
NCBI Name	`LOC131015230`
原始查询	`SmilChr01G002303`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	peroxisomal acyl-coenzyme A oxidase 1-like
产物	peroxisomal acyl-coenzyme A oxidase 1-like
Arabidopsis	`AT4G16760` (ACX1) acyl-CoA oxidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:827381] identity=79.8; qcov=1; evalue=0; confidence=high
Rice	`Os06g0103500` (ACX1) - identity=76.4; qcov=0.995; evalue=0; confidence=high
GO	GO:0001676 (long-chain fatty acid metabolic process); GO:0003997 (acyl-CoA oxidase activity); GO:0005504 (fatty acid binding); GO:0005777 (peroxisome); GO:0033540 (fatty acid beta-oxidation using acyl-CoA oxidase); GO:0055088 (lipid homeostasis); GO:0071949 (FAD binding)
KEGG	smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01756 (ACOX); PF02770 (Acyl-CoA_dh_M); PF14749 (Acyl-CoA_ox_N); PF22924 (ACOX_C_alpha1)
InterPro	-
eggNOG	-
NR	GeneID:131015230

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057799513.1`
2	Cytosol	细胞质基质	0.20000	`XP_057799513.1`
3	Nucleus	细胞核	0.00000	`XP_057799513.1`
4	Chromosome	染色体	0.00000	`XP_057799513.1`
5	Centromere	着丝粒	0.00000	`XP_057799513.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:39892563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:39892655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B121,B13,B2
`Chr1:39892964`	`TCA`	`T`	2bp_deletion	frameshift_variant	2	B109,C37
`Chr1:39892964`	`TCA`	`T`	2bp_deletion	CDS_variant	2	B109,C37
`Chr1:39898593`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C71
`Chr1:39898593`	`TG`	`T`	1bp_deletion	CDS_variant	1	C71
`Chr1:39900566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799513.1

664 aa

332

664

Acyl-CoA_ox_N

Acyl-CoA_dh_M

ACOX_C_alpha1

ACOX

PF14749 Acyl-CoA_ox_N 17-132 aa PF02770 Acyl-CoA_dh_M 134-236 aa PF22924 ACOX_C_alpha1 278-439 aa PF01756 ACOX 479-656 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799513.1`	Pfam	`PF14749`	Acyl-CoA_ox_N	Domain	17	132	1.7e-31	109.9	Acyl-coenzyme A oxidase N-terminal
`XP_057799513.1`	Pfam	`PF02770`	Acyl-CoA_dh_M	Domain	134	236	1.4e-09	38.7	Acyl-CoA dehydrogenase, middle domain
`XP_057799513.1`	Pfam	`PF22924`	ACOX_C_alpha1	Domain	278	439	3.8e-68	229.3	Acyl-CoA oxidase, C-alpha1 domain
`XP_057799513.1`	Pfam	`PF01756`	ACOX	Family	479	656	5.6e-56	189.8	Acyl-CoA oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943530.1
AAGCCAAATGGAAAAAGAAAAATGTGCGTCAATTTGCATAGACGCACACACAATAATTACGTGTACCAACTCTTTACATTATCATCATCATCATCTACTGTAATATAAATGCACACATTGAGAACTTCGTATGCCAATTTCTCATCGCAAATCTTTCTCTCTCTTATTCCCAAAATATACCCGCAGACACCCATTTCTCAGAAGATTTTAGGCCAATTTGTTTGTTAATTTGTAAGCAACATCAGTAATTTAGCTGCTGA...

CDS

1 records

下载 CDS FASTA

LOC131015230
ATGGCGGGAGTGGACTATCTAGCTGATGAGAGGAAGAAGGCGGAGTTCGATGTCGACTCCATGAAGATTGTGTGGGCTGGTTCCCGTCATACCTTCCAAGTTTGCGATCGAATTTCCAAGCTCGTGGCGAATGATCCGGAATTTCGAAAGGATGACAGACCTATGCTGCCAAGAAAGGAATTGTTTAAAAATACACTTAGGAAGGCAGCTTATGCATGGAAGCGTATTATTGAACTTCGTCTATCAGAAGAAGAGGCATC...

Protein

1 records

下载 Protein FASTA

XP_057799513.1
MAGVDYLADERKKAEFDVDSMKIVWAGSRHTFQVCDRISKLVANDPEFRKDDRPMLPRKELFKNTLRKAAYAWKRIIELRLSEEEASKLRFFVDEPAYTDLHWGMFVPALKGQCTDEQQSKWLPLAYKMKIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITEGEDHGVHGFIVQLRSMEDHKPLPGITVGDIGMKFGNGAYNTMDNGVLRFDHVRIPRDQMMMRVSQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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