Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002319`

染色体: Chr01 坐标: 40220751-40228519 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002319`
名称	SmilChr01G002319
描述	E3 ubiquitin-protein ligase HOS1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	40220751 - 40228519 / `+`

ID 对照

NCBI Gene ID	`LOC131015348`
GeneID	`131015348`
locus_tag	`-`
NCBI Name	`LOC131015348`
原始查询	`SmilChr01G002319`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase HOS1-like
产物	E3 ubiquitin-protein ligase HOS1-like
Arabidopsis	`AT2G39810` (HOS1) ubiquitin-protein ligase [Source:NCBI gene (formerly Entrezgene);Acc:818568] identity=59; qcov=0.966; evalue=0; confidence=high
Rice	`Os03g0737200` (OsHOS1) - identity=49.2; qcov=0.98; evalue=0; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF13920 (zf-C3HC4_3); PF13934 (ELYS)
InterPro	-
eggNOG	-
NR	GeneID:131015348

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799708.1`
2	Nucleus membrane	核膜	0.60000	`XP_057799708.1`
3	Chromosome	染色体	0.00000	`XP_057799708.1`
4	Centromere	着丝粒	0.00000	`XP_057799708.1`
5	Chromatin	染色质	0.00000	`XP_057799708.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:40221207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,C59
`Chr1:40221254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,D11
`Chr1:40222086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr1:40222185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B14,B7,C43,C45
`Chr1:40222885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr1:40224678`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B59
`Chr1:40224678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr1:40225037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr1:40225046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C50,C84
`Chr1:40228204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B18,C4,C49,D1
`Chr1:40228309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,C31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799708.1

710 aa

355

710

zf-C3HC4_3

ELYS

PF13920 zf-C3HC4_3 49-80 aa PF13934 ELYS 309-577 aa

XP_057799716.1

709 aa

354

709

zf-C3HC4_3

ELYS

PF13920 zf-C3HC4_3 48-79 aa PF13934 ELYS 308-576 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799708.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	49	80	1.2e-06	29.0	Zinc finger, C3HC4 type (RING finger)
`XP_057799708.1`	Pfam	`PF13934`	ELYS	Repeat	309	577	1.3e-39	137.1	Nuclear pore complex assembly
`XP_057799716.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	48	79	1.2e-06	29.0	Zinc finger, C3HC4 type (RING finger)
`XP_057799716.1`	Pfam	`PF13934`	ELYS	Repeat	308	576	1.3e-39	137.1	Nuclear pore complex assembly

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943725.1
TTTTTTTTTGGCAGAATTGAACTCTTGCAAAAAATGGCTCAAAAAGAATAGTGATTAGTGAGAAGAACAATTTCCCTGCAAAAACCTTTTAAAACCCTCCAACTAAACTCGTTCAAATCCTCGCTCCCTTTCTCTCTATCTCGTTACTTCTGCTTTAGTTGCAGTATAGACTGAGGTAGAATTCATATTGCCTCTGCTAATTCTGCTGCTTGTAAAGCGTATCAAGCAATGGTTGGTCCAAAGTTCGACGAGCCCACCGC...

XM_057943733.1
TTTTTTTTTGGCAGAATTGAACTCTTGCAAAAAATGGCTCAAAAAGAATAGTGATTAGTGAGAAGAACAATTTCCCTGCAAAAACCTTTTAAAACCCTCCAACTAAACTCGTTCAAATCCTCGCTCCCTTTCTCTCTATCTCGTTACTTCTGCTTTAGTTGCAGTATAGACTGAGGTAGAATTCATATTGCCTCTGCTAATTCTGCTGCTTGTAAAGCGTATCAAGCAATGGTTGGTCCAAAGTTCGACGAGCCCACCGC...

CDS

2 records

下载 CDS FASTA

LOC131015348
ATGGTTGGTCCAAAGTTCGACGAGCCCACCGCATCTCGTACCCAGAAGGCGTTAGTTCGTTTGGCGTCGATTGATCCGATGGAGTTGTGCAATGAAGCTAAAGTAGAGCGGTGTAGGGCGACTAGGGATTTGAGAAGCTGCGGCCGCAATGTACAGAGGGTTCTTATTCCCTGCGGCCATGCTGCTTTGTGCGATGAATGCAGTCAAAGATGTGACGTTTGCCCCATTTGTCGAATGTCCCTGCCGAAGGGGGGAAATGA...

LOC131015348
ATGGTTGGTCCAAAGTTCGACGAGCCCACCGCATCTCGTACCCAGGCGTTAGTTCGTTTGGCGTCGATTGATCCGATGGAGTTGTGCAATGAAGCTAAAGTAGAGCGGTGTAGGGCGACTAGGGATTTGAGAAGCTGCGGCCGCAATGTACAGAGGGTTCTTATTCCCTGCGGCCATGCTGCTTTGTGCGATGAATGCAGTCAAAGATGTGACGTTTGCCCCATTTGTCGAATGTCCCTGCCGAAGGGGGGAAATGAGCT...

Protein

2 records

下载 Protein FASTA

XP_057799708.1
MVGPKFDEPTASRTQKALVRLASIDPMELCNEAKVERCRATRDLRSCGRNVQRVLIPCGHAALCDECSQRCDVCPICRMSLPKGGNELPLRLYYECIEAGLISKRCDDRLRDKEDTANQLVADVQRLYSLFDVSLENNLVSLICHYIMDVCMDEGAVSSDPVTAFLLDEKVVKDWCRRTFKSILEELKAIYSKTVSEMKTELSSLLKNSSKLAGLSNVLEVLESSFRGSISAIIQDLNHLQESILKTKQHLEIMAWCIRH...

XP_057799716.1
MVGPKFDEPTASRTQALVRLASIDPMELCNEAKVERCRATRDLRSCGRNVQRVLIPCGHAALCDECSQRCDVCPICRMSLPKGGNELPLRLYYECIEAGLISKRCDDRLRDKEDTANQLVADVQRLYSLFDVSLENNLVSLICHYIMDVCMDEGAVSSDPVTAFLLDEKVVKDWCRRTFKSILEELKAIYSKTVSEMKTELSSLLKNSSKLAGLSNVLEVLESSFRGSISAIIQDLNHLQESILKTKQHLEIMAWCIRHE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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