当前解析结果
SmilChr01G002328| 统一新 Gene ID | SmilChr01G002328 |
|---|---|
| 名称 | SmilChr01G002328 |
| 描述 | xyloglucan endotransglucosylase/hydrolase protein 3-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 40440756 - 40444375 / + |
| NCBI Gene ID | LOC131008102 |
|---|---|
| GeneID | 131008102 |
| locus_tag | - |
| NCBI Name | LOC131008102 |
| 原始查询 | SmilChr01G002328 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | xyloglucan endotransglucosylase/hydrolase protein 3-like |
| 产物 | xyloglucan endotransglucosylase/hydrolase protein 3-like |
| Arabidopsis | AT3G25050 (XTH3)xyloglucan endotransglucosylase/hydrolase 3 [Source:NCBI gene (formerly Entrezgene);Acc:822096] identity=47.3; qcov=1.02; evalue=6.31e-71; confidence=high |
| Rice | Os06g0237400- identity=40.8; qcov=1.05; evalue=2.13e-60; confidence=medium |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis) |
| KEGG | - |
| Pfam | PF00722 (Glyco_hydro_16) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008102 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057790985.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057790985.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057790985.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790985.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790985.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:40440768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B82,C75,D9 |
Chr1:40440780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B139 |
Chr1:40440782 |
A |
AT |
1bp_insertion | frameshift_variant | 46 | A19,A22,A24,A25,B102,B103,B104,B107,B108,B115,B127,B132,B135,B136,B14,B16,B20,B29,B3,B31,B34,B39,B42,B43,B48,B57,B71,B76,B88,C1,C15,C24,C33,C43,C45,C47,C49,C5,C54,C56,C68,C77,C79,C80,C9,D5 |
Chr1:40440821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:40442727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B74,C16,C61 |
Chr1:40442811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B13,B139 |
Chr1:40444197 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | B110,B128,B65,B97,C13,C52,C72 |
Chr1:40444247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,C75,D11 |
Chr1:40444285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,C75,D11 |
Chr1:40444296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B8 |
Chr1:40444305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,C75,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790985.1PF00722
Glyco_hydro_16 12-177 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790985.1 |
Pfam | PF00722 |
Glyco_hydro_16 | Domain | 12 | 177 | 5.3e-47 | 160.2 | Glycosyl hydrolases family 16 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。