Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002347`

染色体: Chr01 坐标: 40608642-40614970 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002347`
名称	SmilChr01G002347
描述	GATA transcription factor 26
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	40608642 - 40614970 / `-`

ID 对照

NCBI Gene ID	`LOC131024610`
GeneID	`131024610`
locus_tag	`-`
NCBI Name	`LOC131024610`
原始查询	`SmilChr01G002347`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GATA transcription factor 26
产物	GATA transcription factor 26
Arabidopsis	`AT4G17570` (GATA26) GATA transcription factor 26 [Source:NCBI gene (formerly Entrezgene);Acc:827474] identity=51.3; qcov=0.983; evalue=3.1e-142; confidence=high
Rice	`Os04g0544500` (OsGATA21) - identity=50; qcov=0.571; evalue=8.56e-71; confidence=medium
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF00320 (GATA); PF13919 (ASXH)
InterPro	-
eggNOG	-
NR	GeneID:131024610

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810104.1`
2	Chromosome	染色体	0.00000	`XP_057810104.1`
3	Centromere	着丝粒	0.00000	`XP_057810104.1`
4	Chromatin	染色质	0.00000	`XP_057810104.1`
5	Telomere	端粒	0.00000	`XP_057810104.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:40608959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B56,B96,C23
`Chr1:40610022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C35
`Chr1:40610250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:40610857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B132,B30,B53,C39,C4
`Chr1:40611170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr1:40612085`	`TG`	`T`	1bp_deletion	frameshift_variant	2	C34,C50
`Chr1:40612085`	`TG`	`T`	1bp_deletion	CDS_variant	2	C34,C50
`Chr1:40612763`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B31
`Chr1:40612763`	`C`	`CA`	1bp_insertion	CDS_variant	1	B31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810104.1

546 aa

273

546

GATA

ASXH

PF00320 GATA 18-48 aa PF13919 ASXH 295-372 aa

XP_057810110.1

539 aa

270

539

GATA

ASXH

PF00320 GATA 7-41 aa PF13919 ASXH 288-365 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810104.1`	Pfam	`PF00320`	GATA	Domain	18	48	1.5e-10	41.2	GATA zinc finger
`XP_057810104.1`	Pfam	`PF13919`	ASXH	Domain	295	372	1.3e-09	38.9	Asx homology domain
`XP_057810110.1`	Pfam	`PF00320`	GATA	Domain	7	41	3e-14	53.0	GATA zinc finger
`XP_057810110.1`	Pfam	`PF13919`	ASXH	Domain	288	365	1.3e-09	38.9	Asx homology domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954127.1
ATACACTTTAATTATATTACTAGTGAAGAAAGCTGAAACATTTACTTCACATACAATAAAAAATTCAATACATGAATAACAAAGTCATATACAGAAAACATACCCCTTTTCCTCCCTTTACCAATTTTTCATCTTATTTTTTTCCCATTGATTTATTCCAAATGGTGTTTTGTATCTCTCAATTGGATTGACTTCCATTCATTCTCAGCTTAATACCCACATCTTTTTTCCTCCTTCACTCCTCCTCTGAATTTGGCACT...

XM_057954121.1
ATAAAAAATTCAATACATGAATAACAAAGTCATATACAGAAAACATACCCCTTTTCCTCCCTTTACCAATTTTTCATCTTATTTTTTTCCCATTGATTTATTCCAAATGGTGTTTTGTATCTCTCAATTGGATTGACTTCCATTCATTCTCAGCTTAATACCCACATCTTTTTTCCTCCTTCACTCCTCCTCTGAATTTGGCACTTTTTAGTGGGTTTCTCTCAGACTAAAAGGAAAAAAGAAAAAAATTGGTTTCATTG...

CDS

2 records

下载 CDS FASTA

LOC131024610
ATGGGAAAGCATGGACCTTGCTATCACTGTGGTGTTACAAGCACCCCTCTTTGGCGAAATGGGCCTCCAGAGAAGCCAGTACTCTGCAATGCATGTGGTTCGCGGTGGAGGACAAAGGGAACTCTGGCAAACTATACACCTCTACACGCTAGGGCGGAACCTGATGAGTTGGAGGATTTGAGGTTTTCTAGGGTGAAAACTATATCTATTAAGAACAAAGAGCCAAAGGTTCTGAAGCGGAAGCTCAATAGTGAGGTAGC...

LOC131024610
ATGGACCTTGCTATCACTGTGGTGTTACAAGTTTATTTGACTGCTCATAATCATGCAACAGGCACCCCTCTTTGGCGAAATGGGCCTCCAGAGAAGCCAGTACTCTGCAATGCATGTGGTTCGCGGTGGAGGACAAAGGGAACTCTGGCAAACTATACACCTCTACACGCTAGGGCGGAACCTGATGAGTTGGAGGATTTGAGGTTTTCTAGGGTGAAAACTATATCTATTAAGAACAAAGAGCCAAAGGTTCTGAAGCG...

Protein

2 records

下载 Protein FASTA

XP_057810104.1
MDLAITVVLQVYLTAHNHATGTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDELEDLRFSRVKTISIKNKEPKVLKRKLNSEVAEFGDGPPENYQGLHKVYDEDTSNRSSSGSAISNSEKYAQYGIADTSDLTSPAQPSAWDSIVPSRKRTCVARPKPSPVEVLTKDLYTLWYEQQSSCLSGSSEEDLLLESDKPMVSVEIGHGSVLIRHPSSVFREEESEASSLSVDNKQYTLTSRDMSFHGPIEDTGA...

XP_057810110.1
MGKHGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDELEDLRFSRVKTISIKNKEPKVLKRKLNSEVAEFGDGPPENYQGLHKVYDEDTSNRSSSGSAISNSEKYAQYGIADTSDLTSPAQPSAWDSIVPSRKRTCVARPKPSPVEVLTKDLYTLWYEQQSSCLSGSSEEDLLLESDKPMVSVEIGHGSVLIRHPSSVFREEESEASSLSVDNKQYTLTSRDMSFHGPIEDTGAYSSSKVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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