Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002354`

染色体: Chr01 坐标: 40720872-40726524 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002354`
名称	SmilChr01G002354
描述	trihelix transcription factor GTL1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	40720872 - 40726524 / `-`

ID 对照

NCBI Gene ID	`LOC131024673`
GeneID	`131024673`
locus_tag	`-`
NCBI Name	`LOC131024673`
原始查询	`SmilChr01G002354`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trihelix transcription factor GTL1-like
产物	trihelix transcription factor GTL1-like
Arabidopsis	`AT1G76880` (AT1G76880) Duplicated homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844023] identity=47; qcov=0.852; evalue=5.68e-126; confidence=high
Rice	`Os02g0648300` - identity=54.1; qcov=0.448; evalue=1.03e-62; confidence=low
GO	-
KEGG	-
Pfam	PF10545 (MADF_DNA_bdg); PF13837 (Myb_DNA-bind_4)
InterPro	-
eggNOG	-
NR	GeneID:131024673

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810169.1`
2	Chromosome	染色体	0.00000	`XP_057810169.1`
3	Centromere	着丝粒	0.00000	`XP_057810169.1`
4	Chromatin	染色质	0.00000	`XP_057810169.1`
5	Telomere	端粒	0.00000	`XP_057810169.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:40721451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:40722214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr1:40722227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B60
`Chr1:40722392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B125,B90,B92
`Chr1:40722410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:40722483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr1:40722519`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C31,D11
`Chr1:40722677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr1:40722968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C57
`Chr1:40723020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:40723093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B103,B140,C9
`Chr1:40723196`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810169.1

605 aa

302

605

Myb_DNA-bind_4

MADF_DNA_bdg

Myb_DNA-bind_4

MADF_DNA_bdg

PF13837 Myb_DNA-bind_4 81-168 aa PF10545 MADF_DNA_bdg 101-167 aa PF13837 Myb_DNA-bind_4 391-478 aa PF10545 MADF_DNA_bdg 410-476 aa

XP_057810178.1

604 aa

302

604

Myb_DNA-bind_4

MADF_DNA_bdg

Myb_DNA-bind_4

MADF_DNA_bdg

PF13837 Myb_DNA-bind_4 81-168 aa PF10545 MADF_DNA_bdg 101-167 aa PF13837 Myb_DNA-bind_4 390-477 aa PF10545 MADF_DNA_bdg 409-475 aa

XP_057810186.1

601 aa

300

601

Myb_DNA-bind_4

MADF_DNA_bdg

Myb_DNA-bind_4

MADF_DNA_bdg

PF13837 Myb_DNA-bind_4 81-168 aa PF10545 MADF_DNA_bdg 101-167 aa PF13837 Myb_DNA-bind_4 387-474 aa PF10545 MADF_DNA_bdg 406-472 aa

XP_057810194.1

524 aa

262

524

Myb_DNA-bind_4

MADF_DNA_bdg

Myb_DNA-bind_4

MADF_DNA_bdg

PF13837 Myb_DNA-bind_4 81-168 aa PF10545 MADF_DNA_bdg 101-167 aa PF13837 Myb_DNA-bind_4 391-478 aa PF10545 MADF_DNA_bdg 410-476 aa

XP_057810204.1

523 aa

262

523

Myb_DNA-bind_4

MADF_DNA_bdg

Myb_DNA-bind_4

MADF_DNA_bdg

PF13837 Myb_DNA-bind_4 81-168 aa PF10545 MADF_DNA_bdg 101-167 aa PF13837 Myb_DNA-bind_4 390-477 aa PF10545 MADF_DNA_bdg 409-475 aa

XP_057810207.1

520 aa

260

520

Myb_DNA-bind_4

MADF_DNA_bdg

Myb_DNA-bind_4

MADF_DNA_bdg

PF13837 Myb_DNA-bind_4 81-168 aa PF10545 MADF_DNA_bdg 101-167 aa PF13837 Myb_DNA-bind_4 387-474 aa PF10545 MADF_DNA_bdg 406-472 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810169.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	81	168	3.5e-50	169.1	Myb/SANT-like DNA-binding domain
`XP_057810169.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	101	167	3.7e-10	40.7	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810169.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	391	478	3.5e-50	169.1	Myb/SANT-like DNA-binding domain
`XP_057810169.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	410	476	3.7e-10	40.7	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810178.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	81	168	3.4e-50	169.1	Myb/SANT-like DNA-binding domain
`XP_057810178.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	101	167	3.7e-10	40.7	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810178.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	390	477	3.4e-50	169.1	Myb/SANT-like DNA-binding domain
`XP_057810178.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	409	475	3.7e-10	40.7	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810186.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	81	168	3.4e-50	169.1	Myb/SANT-like DNA-binding domain
`XP_057810186.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	101	167	3.5e-10	40.8	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810186.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	387	474	3.4e-50	169.1	Myb/SANT-like DNA-binding domain
`XP_057810186.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	406	472	3.5e-10	40.8	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810194.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	81	168	2.3e-50	169.6	Myb/SANT-like DNA-binding domain
`XP_057810194.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	101	167	2.5e-10	41.3	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810194.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	391	478	2.3e-50	169.6	Myb/SANT-like DNA-binding domain
`XP_057810194.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	410	476	2.5e-10	41.3	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810204.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	81	168	2.3e-50	169.6	Myb/SANT-like DNA-binding domain
`XP_057810204.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	101	167	2.9e-10	41.1	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810204.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	390	477	2.3e-50	169.6	Myb/SANT-like DNA-binding domain
`XP_057810204.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	409	475	2.9e-10	41.1	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810207.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	81	168	2.2e-50	169.7	Myb/SANT-like DNA-binding domain
`XP_057810207.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	101	167	2.9e-10	41.1	Alcohol dehydrogenase transcription factor Myb/SANT-like
`XP_057810207.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	387	474	2.2e-50	169.7	Myb/SANT-like DNA-binding domain
`XP_057810207.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	406	472	2.9e-10	41.1	Alcohol dehydrogenase transcription factor Myb/SANT-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057954224.1
GTGAAGCAGCTGACAACGTAGCATTTGTTTGCTCTCTTCTCTCTCTCTCTCTCAATCATCGTCACCTTCATAAATCCTTAGCCTTTTATTCTGTCAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGTGTCATACTCACACAGAAACACGCAGTTTTACAGTTAATAGTGATGATTATGGCATTCATCCTATGTTACTTTTTCTCTTTTCAGGCAACTGTGTCTTCAATCTTGCTTCCAAA...

XM_057954203.1
GTGAAGCAGCTGACAACGTAGCATTTGTTTGCTCTCTTCTCTCTCTCTCTCTCAATCATCGTCACCTTCATAAATCCTTAGCCTTTTATTCTGTCAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGTGTCATACTCACACAGAAACACGCAGTTTTACAGTTAATAGTGATGATTATGGCATTCATCCTATGTTACTTTTTCTCTTTTCAGGCAACTGTGTCTTCAATCTTGCTTCCAAA...

CDS

6 records

下载 CDS FASTA

LOC131024673
ATGCAACATCAGCATCAACAGCAGCAATCGGGAGGCGGCGGAGGGCCTCAATCCCTGGGCGGATACGGCGGCGGCGCGGCGGCGGAGGTGGTGGTGAGTGATGAGGATCAGAAATTGGGAGATCTGGGAATTGCGGAAGCAGCTTCACCGATTAGCAGCCGGCCGCCAGCTCCGGCGGCCATTAGGAATGCTAATTTTGAAGAAATGATTCAAGCGACGGCGGAGGCCGGCGGCTCCTCCAGCAACCGGTGGCCGCGGCA...

Protein

6 records

下载 Protein FASTA

XP_057810169.1
MQHQHQQQQSGGGGGPQSLGGYGGGAAAEVVVSDEDQKLGDLGIAEAASPISSRPPAPAAIRNANFEEMIQATAEAGGSSSNRWPRQETLALLQIRSEMDTAFRDATLKGPLWEQVSRKLGELGYKRSAKKCKEKFENVHKYYKRTKEGRGGRQDGKSYKFFSQLEALHHNTAAALLPTPSPPIAATSVSLPIPAAVSLPPPDPAAAAALFGISFSSDSSSSDSEDDDDEMEETELTNQRKRKRSDQGGESDERMMDFFE...

XP_057810178.1
MQHQHQQQQSGGGGGPQSLGGYGGGAAAEVVVSDEDQKLGDLGIAEAASPISSRPPAPAAIRNANFEEMIQATAEAGGSSSNRWPRQETLALLQIRSEMDTAFRDATLKGPLWEQVSRKLGELGYKRSAKKCKEKFENVHKYYKRTKEGRGGRQDGKSYKFFSQLEALHHNTAAALLPTPSPPIAATSVSLPIPAAVSLPPPDPAAAAALFGISFSSDSSSSDSEDDDDEMEETELTNQRKRKRSDQGGESDERMMDFFE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器