当前解析结果
SmilChr01G002365| 统一新 Gene ID | SmilChr01G002365 |
|---|---|
| 名称 | SmilChr01G002365 |
| 描述 | uncharacterized SmilChr01G002365 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 40821774 - 40828056 / - |
| NCBI Gene ID | LOC131024806 |
|---|---|
| GeneID | 131024806 |
| locus_tag | - |
| NCBI Name | LOC131024806 |
| 原始查询 | SmilChr01G002365 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840111]; symbol=AT1G32190; hit=AT1G32190; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840111]; symbol=AT1G32190; hit=AT1G32190; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G32190 (AT1G32190)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840111] identity=65.5; qcov=1.04; evalue=1.52e-166; confidence=high |
| Rice | Os08g0161500 (P0577B11.117)- identity=71.8; qcov=0.892; evalue=1.16e-158; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024806 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057810327.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057810327.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810327.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810327.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810327.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:40822029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,D6 |
Chr1:40822101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,B99,C85 |
Chr1:40822165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B103,C4,C9 |
Chr1:40822230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,B99,C85 |
Chr1:40822233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:40822427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr1:40822458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:40825047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:40825505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B103,C4,C9 |
Chr1:40825519 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B66 |
Chr1:40825519 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810327.1PF12146
Hydrolase_4 73-179 aa
PF00561
Abhydrolase_1 77-177 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810327.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 73 | 179 | 2.4e-11 | 44.2 | Serine aminopeptidase, S33 |
XP_057810327.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 77 | 177 | 1.8e-10 | 41.6 | alpha/beta hydrolase fold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。