当前解析结果
SmilChr01G002403| 统一新 Gene ID | SmilChr01G002403 |
|---|---|
| 名称 | SmilChr01G002403 |
| 描述 | cation/H(+) antiporter 15 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 41388359 - 41392010 / + |
| NCBI Gene ID | LOC131025109 |
|---|---|
| GeneID | 131025109 |
| locus_tag | - |
| NCBI Name | LOC131025109 |
| 原始查询 | SmilChr01G002403 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cation/H(+) antiporter 15 |
| 产物 | cation/H(+) antiporter 15 |
| Arabidopsis | AT2G13620 (CHX15)cation/hydrogen exchanger 15 [Source:NCBI gene (formerly Entrezgene);Acc:815847] identity=72.4; qcov=0.989; evalue=0; confidence=high |
| Rice | Os05g0485000 (OsCHX16)- identity=57.2; qcov=0.954; evalue=0; confidence=high |
| GO | GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025109 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810706.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057810706.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810706.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810706.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810706.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:41389679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B99,C83,C85 |
Chr1:41390045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B4,B61 |
Chr1:41390243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B68,C42,D10 |
Chr1:41390444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:41390678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C55 |
Chr1:41390751 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B75 |
Chr1:41390751 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B75 |
Chr1:41390763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:41390852 |
CCA |
C |
2bp_deletion | frameshift_variant | 1 | C7 |
Chr1:41390852 |
CCA |
C |
2bp_deletion | CDS_variant | 1 | C7 |
Chr1:41390978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr1:41391513 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810706.1PF00999
Na_H_Exchanger 50-429 aa
PF23256
CHX17_2nd 487-612 aa
PF23259
CHX17_C 626-784 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810706.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 50 | 429 | 9.4e-64 | 216.3 | Sodium/hydrogen exchanger, transmembrane |
XP_057810706.1 |
Pfam | PF23256 |
CHX17_2nd | Domain | 487 | 612 | 8.6e-51 | 172.0 | Plant cation/H(+) antiporter domain |
XP_057810706.1 |
Pfam | PF23259 |
CHX17_C | Domain | 626 | 784 | 8.8e-48 | 162.8 | Plant cation/H(+) antiporter, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。