当前解析结果
SmilChr01G002416| 统一新 Gene ID | SmilChr01G002416 |
|---|---|
| 名称 | SmilChr01G002416 |
| 描述 | uncharacterized SmilChr01G002416 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 41537580 - 41538929 / + |
| NCBI Gene ID | LOC131008195 |
|---|---|
| GeneID | 131008195 |
| locus_tag | - |
| NCBI Name | LOC131008195 |
| 原始查询 | SmilChr01G002416 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=weak |
| 产物 | hit=Os06g0484800; species=rice; confidence=weak |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=28.4; qcov=0.737; evalue=1.18e-27; confidence=low |
| Rice | Os06g0484800- identity=24.8; qcov=0.791; evalue=1.08e-28; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008195 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791072.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057791072.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057791072.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791072.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791072.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:41537592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr1:41537614 |
CGG |
C |
2bp_deletion | frameshift_variant | 2 | B55,C64 |
Chr1:41537614 |
CGG |
C |
2bp_deletion | CDS_variant | 2 | B55,C64 |
Chr1:41537618 |
T |
TAC |
2bp_insertion | frameshift_variant | 2 | B55,C64 |
Chr1:41537618 |
T |
TAC |
2bp_insertion | CDS_variant | 2 | B55,C64 |
Chr1:41537735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:41537746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:41537799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B63,B72,C48 |
Chr1:41537805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,B72,C48 |
Chr1:41537857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr1:41537862 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | D11 |
Chr1:41537862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。