Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002429`

染色体: Chr01 坐标: 41833505-41837531 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002429`
名称	SmilChr01G002429
描述	flavin-containing monooxygenase FMO GS-OX-like 4
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	41833505 - 41837531 / `+`

ID 对照

NCBI Gene ID	`LOC131025327`
GeneID	`131025327`
locus_tag	`-`
NCBI Name	`LOC131025327`
原始查询	`SmilChr01G002429`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flavin-containing monooxygenase FMO GS-OX-like 4
产物	flavin-containing monooxygenase FMO GS-OX-like 4
Arabidopsis	`AT1G62620` (AT1G62620) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842559] identity=60.1; qcov=0.949; evalue=0; confidence=high
Rice	`Os10g0553800` - identity=57.6; qcov=0.909; evalue=1.8e-171; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	-
Pfam	PF00743 (FMO-like); PF00890 (FAD_binding_2); PF01266 (DAO); PF01593 (Amino_oxidase); PF07992 (Pyr_redox_2); PF12831 (FAD_oxidored); PF13450 (NAD_binding_8); PF13454 (NAD_binding_9); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131025327

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057811038.1`
2	Cytoplasm	细胞质	0.60000	`XP_057811038.1`
3	Nucleus	细胞核	0.00000	`XP_057811038.1`
4	Chromosome	染色体	0.00000	`XP_057811038.1`
5	Centromere	着丝粒	0.00000	`XP_057811038.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:41833663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C55,D11
`Chr1:41833686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B129,B57
`Chr1:41833969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B138
`Chr1:41834109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr1:41834985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr1:41834996`	`C`	`CT`	1bp_insertion	frameshift_variant	1	D3
`Chr1:41834996`	`C`	`CT`	1bp_insertion	CDS_variant	1	D3
`Chr1:41836419`	`AC`	`A`	1bp_deletion	frameshift_variant	2	B117,C69
`Chr1:41836419`	`AC`	`A`	1bp_deletion	CDS_variant	2	B117,C69
`Chr1:41836422`	`G`	`GA`	1bp_insertion	frameshift_variant	2	B117,C69
`Chr1:41836422`	`G`	`GA`	1bp_insertion	CDS_variant	2	B117,C69
`Chr1:41836807`	`CT`	`C`	1bp_deletion	frameshift_variant	2	C14,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811038.1

470 aa

235

470

FMO-like

Pyr_redox_2

DAO

FAD_binding_2

FAD_oxidored

NAD_binding_9

NAD_binding_8

Amino_oxidase

Pyr_redox_3

FMO-like

PF00743 FMO-like 23-250 aa PF07992 Pyr_redox_2 24-306 aa PF01266 DAO 25-60 aa PF00890 FAD_binding_2 25-63 aa PF12831 FAD_oxidored 25-63 aa PF13454 NAD_binding_9 26-185 aa PF13450 NAD_binding_8 27-62 aa PF01593 Amino_oxidase 33-59 aa PF13738 Pyr_redox_3 104-308 aa PF00743 FMO-like 267-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811038.1`	Pfam	`PF00743`	FMO-like	Family	23	250	1e-50	173.4	Flavin-binding monooxygenase-like
`XP_057811038.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	24	306	1.7e-14	54.6	Pyridine nucleotide-disulphide oxidoreductase
`XP_057811038.1`	Pfam	`PF01266`	DAO	Domain	25	60	3.9e-12	47.1	FAD dependent oxidoreductase
`XP_057811038.1`	Pfam	`PF00890`	FAD_binding_2	Domain	25	63	9.4e-09	35.7	FAD binding domain
`XP_057811038.1`	Pfam	`PF12831`	FAD_oxidored	Family	25	63	3.5e-07	30.6	FAD dependent oxidoreductase
`XP_057811038.1`	Pfam	`PF13454`	NAD_binding_9	Domain	26	185	2.7e-05	24.9	FAD-NAD(P)-binding
`XP_057811038.1`	Pfam	`PF13450`	NAD_binding_8	Domain	27	62	3.9e-10	40.6	NAD(P)-binding Rossmann-like domain
`XP_057811038.1`	Pfam	`PF01593`	Amino_oxidase	Domain	33	59	8.9e-06	26.0	Flavin containing amine oxidoreductase
`XP_057811038.1`	Pfam	`PF13738`	Pyr_redox_3	Family	104	308	1.4e-19	71.2	Pyridine nucleotide-disulphide oxidoreductase
`XP_057811038.1`	Pfam	`PF00743`	FMO-like	Family	267	380	1e-50	173.4	Flavin-binding monooxygenase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955055.1
TATTTATTCCACAAATATGAATGATGCACTGAACAATAATCCAAATGCCTATTCCCAACCCGACTCCGACATTCCACTTCCCTCTTCCCGCGATGCCGTCAGCCATCTCCAGAGCCGTCGCCGTCATCGGAGCCGGGGCCGCCGGGCTTTGCGCCGCCCTTGAACTCCGACGAGAAGGCCACAACGTCGTTGTGTACGAGCGGGAAGACAATTTAGGCGGCACATGGGCCTACACCCCCCAAACAGAGGCCGACCCGTTA...

CDS

1 records

下载 CDS FASTA

LOC131025327
ATGCCTATTCCCAACCCGACTCCGACATTCCACTTCCCTCTTCCCGCGATGCCGTCAGCCATCTCCAGAGCCGTCGCCGTCATCGGAGCCGGGGCCGCCGGGCTTTGCGCCGCCCTTGAACTCCGACGAGAAGGCCACAACGTCGTTGTGTACGAGCGGGAAGACAATTTAGGCGGCACATGGGCCTACACCCCCCAAACAGAGGCCGACCCGTTAGGCCTCGATCCGACCCGGAACGTGGTCCAATCCAGCGTCTACGC...

Protein

1 records

下载 Protein FASTA

XP_057811038.1
MPIPNPTPTFHFPLPAMPSAISRAVAVIGAGAAGLCAALELRREGHNVVVYEREDNLGGTWAYTPQTEADPLGLDPTRNVVQSSVYASLRTNLPREVMGFRVYPFVASGKPGQDPRRFPGHEEVLEYLRDFAEEFGLAEMVRFGREVCHVGKAADNRRWVVKSMRKGGGDGDDQVYDAVVICNGHYSEPRIADLPGIEEWPGKQIHSHNYRVPDPFRDQVVVLIGSAASADDISRDIAKFAKEVHVASRSAQTDKFGKIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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